Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10075g00002 ATGGGAAACTGCTGCAGATCCCCGGCCGCCGTGGCCCGCGAGGACGTCAAATCGAGCTTCTCCAACGCAGACCACCATGGCAAGCGCGGTTCCGGGGCTGAGGCTGTCAAACAGAAGGCGCCGATCACGGTCCTCGCTGGCGTGCCCAAGGAGAACATCGAGGACCGCTACCTCGTGGACCGCGAGCTCGGCCGCGGCGAGTTCGGCGTGACTTACCTCTGCATCGACCGTGACACGCGCGAGCTGCTCGCTTGCAAAAGCATCTCCAAGCGGAAGCTCAGGACGGCCGTCGACGTCGAGGACGTCCGCCGCGAGGTCGCCATCATGCGCCACCTTCCCGAGAGTCCCAGCATCGTGTCACTCCGCGAAGCCTGTGAGGACGACAATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGGGGTGAGCTCTTCGACCGGATCGTCGCCCGCGGCCACTACACCGAGCGAGCTGCTGCCGCTGTCACTAGGACGATTGTGGAGGTTGTGCAGCTCTGCCACAAGCACGGGGTCATCCATCGCGACCTGAAACCGGAGAATTTCTTGTTTGCAAACAAGAAGGAGAATTCGCCGCTCAAGGCTATTGACTTCGGGCTTTCCATATTCTTCAAGCCAGGTGAGAGTTTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCAGAAGTTCTCAAGCGGAATTATGGACCAGAAATAGATATATGGAGTGCAGGAGTAATTCTCTACATCTTACTGTGTGGTGTTCCCCCGTTTTGGGCTGAATCTGAGCAAGGAGTTGCACAGGCCATTCTTCGGGGGCTTATAGATTTCAAAAGGGAACCTTGGCCAAGTATTTCTGAAAGTGCTAAAAGACTTGTTAGACAAATGTTAGAACCAGACCCTAAGCTTCGATTAACTGCTAAACAAGTGCTTGAGCATCCCTGGCTCCAAAATGCCAAGAAGGCTCCTAATGTTCCACTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCAATGATGAACAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGATATGTTCAAGAAGATGGATAATGATAATGATGGCATTGTTTCCATAGAAGAACTGAAAGCTGGATTTCGAAACTTTGGGTCTCAACTTGCTGAGTCTGAAATTCAGTTGCTTATTGAAGCTGTAGGTAGTAAGGGAACACTAGACTACGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGACGATCATCTTCGTAAGGCCTTCTCCTATTTTGACAAAGATGGGAATGGATATATTGAACCGGATGAGCTACGGAATGCTTTGATGGAAGATGGAGCAGATGATTGTACAGATGTCGCAAATGACATTTTCCAAGAAGTAGACACGGATAAGGATGGACGTATCAGCTACGATGAATTTGTTGCTATGATGAAAACTGGAACGGATTGGAGAAAGGCATCAAGGCATTATTCACGTGGGAGATTCAATAGCTTGAGCTTAAAGTTGATGAAAGACGGTTCTTTAAACTTAGGAAATGAGTAG 1590 0.4893 MGNCCRSPAAVAREDVKSSFSNADHHGKRGSGAEAVKQKAPITVLAGVPKENIEDRYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPESPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGESFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKRLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDNDNDGIVSIEELKAGFRNFGSQLAESEIQLLIEAVGSKGTLDYGEFVAVSLHLKRMANDDHLRKAFSYFDKDGNGYIEPDELRNALMEDGADDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10075g00002 529 Pfam EF hand 362 389 IPR002048 GO:0005509
Vium10075g00002 529 Gene3D Transferase(Phosphotransferase) domain 1 143 323 - -
Vium10075g00002 529 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Vium10075g00002 529 CDD EFh 432 494 IPR002048 GO:0005509
Vium10075g00002 529 FunFam Calcium-dependent protein kinase 1 59 142 - -
Vium10075g00002 529 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Vium10075g00002 529 SUPERFAMILY EF-hand 344 520 IPR011992 -
Vium10075g00002 529 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10075g00002 529 CDD STKc_CAMK 56 314 - -
Vium10075g00002 529 ProSitePatterns EF-hand calcium-binding domain. 371 383 IPR018247 -
Vium10075g00002 529 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Vium10075g00002 529 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Vium10075g00002 529 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 489 - -
Vium10075g00002 529 SUPERFAMILY Protein kinase-like (PK-like) 46 340 IPR011009 -
Vium10075g00002 529 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Vium10075g00002 529 Pfam Protein kinase domain 59 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10075g00002 529 FunFam Calcium-dependent protein kinase 7 324 497 - -
Vium10075g00002 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Vium10075g00002 529 MobiDBLite consensus disorder prediction 16 35 - -
Vium10075g00002 529 Gene3D - 324 497 - -
Vium10075g00002 529 MobiDBLite consensus disorder prediction 18 33 - -
Vium10075g00002 529 FunFam calcium-dependent protein kinase 13 143 323 - -
Vium10075g00002 529 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Vium10075g00002 529 Gene3D Phosphorylase Kinase; domain 1 58 142 - -
Vium10075g00002 529 SMART efh_1 468 496 IPR002048 GO:0005509
Vium10075g00002 529 SMART efh_1 432 460 IPR002048 GO:0005509
Vium10075g00002 529 SMART efh_1 362 390 IPR002048 GO:0005509
Vium10075g00002 529 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium10075g00002 529 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10075g00002 Vium-Chr10075 37575 46339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10075g00002 1 526 EF-hand Containing Proteins AT1G74740 68.352 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium10075g00002 Pkinase 3.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10075g00002 K13412 - gmx:100783922 1009.21