Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1006g00046 ATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTGAAAACTAGAATTTGGCTTGGAACCTTTGAAACGGCTGAAGATGCAGCGAGAGCATATGATGAAGCAGCTAGACTCATGTGTGGACCAAAAGCACGCACCAATTTCCCATACAACCCCAATGAACCACACTCATCCTCATCCAAGCTTCTCTCTGCCACTTTAACGGCTAAGTTACACAAGTGTCACATGGCCTCACTTTCACTTCAAATGGCCAAGCAAAAATCACCACAAAACAAAGAGCCTCAACCCTCAGAAGGGTCCAATCCATTTGCCTCTGCCAATGTCATTGTTGGATCAAGCGCTGAAACTGGTTTTAGATGGACGGAGAATAGACACGAGGAGTTAAGGTGGCTCGAAGGGAATTGGGTTAGCATGGCAGGCCAAGTTGAAGTTTCCCATCAGCAATTTCAACCTGTTCTTGAAGATGATCACATAGAGCAGATGATTCAAGAGTTGCTTGATTATGGATCAATTGAGCTTTGTTCTGTTTGCTCAACCTAG 585 0.4632 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPHSSSSKLLSATLTAKLHKCHMASLSLQMAKQKSPQNKEPQPSEGSNPFASANVIVGSSAETGFRWTENRHEELRWLEGNWVSMAGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELCSVCST 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1006g00046 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 119 - -
Vium1006g00046 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vium1006g00046 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vium1006g00046 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vium1006g00046 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vium1006g00046 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vium1006g00046 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vium1006g00046 194 MobiDBLite consensus disorder prediction 97 120 - -
Vium1006g00046 194 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vium1006g00046 194 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Vium1006g00046 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1006g00046 Vium-Chr1006 294224 295179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1006g00046 1 194 AP2-EREBP Transcription Factor Family AT5G25190 62.887 1.41e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1006g00046 AP2 8.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1006g00046 - - gmx:100777851 356.681