Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1006g00045 ATGTCTAAGGAGGTGAATAAGCAAATTGTTGGGGCAACAAATAAGTCTGTTGATTGTAGTGATGCATTTAACACCACAGAGATTTTTCCTTCTCGAGATGCAATGTTAAATTGGGCTCGAGATGTTGCAAAGGAGAATGGATTTGTCCTTATTATTTTGAGATCAGAGACATCTACAAAACCTACAAGAACTACAAGACGTAATCAAAGGAAGACATTTGTAATTTTGGGTTGTGATAGAAGTGGAAAGTATAGAGGACTATACAAGAATGCATTATCCCAAAAGGTAAATAGTACTAGAAAATGTGAGTGTCCCTTCAGGTTAAGGGGAAAAGCTTTGAAAAAGGCTGAAGGATGGACTGTTAAGGTAATGTGTGGTTGTCACAATCACGAATTGGAGGAAACATTGGTGGGTCATCCATATGCAGGCCGGTTGAGTGCTGAAGAGAAGTCTTTGGTTGATGATATGACAAAGAACATGATGAAGCCAAAAGATATACTTTTGACATTGAAAGATTATAATATGGATAATGTAACTACCATCAAGCAGATTTACAATGCTCGACATGCTTATCGATCCTCTCAAAAAGGTTTAGAAATGCAATACCTTCTGAAATTATTGGAACGTGAGCGGTATGTGTACTGGCATAGAAAGGTGGATGATTCCAATGTTATCAGAGATATATTCTGGACACATCCAGATGCCATTAAACTTCTGGGTGCTTTCAACACTGTCTTGATAATTGATAGTATTTACACAACCACTAGGTATCCATTGCCACTGCTTGAGATTGTTGGTGTTACTTCAACTGAGTTAACATTCTCTGTGGCTTTTGCTTTTGTGGAGTCTGAGCTAGCTGACAACTTCACTTGGGCACTACAAAAGTTAAGAGGATTGATTGTTAAAGACGAAGACATACCTCAAGTGATTGTGACTAACAGAGACATTTCTTTGATGAATGCAGTGCAAGTTGTTTTTCCAAGCTCTTCTAATTTGTTATGTCGGTCTCATATCAACAAGAATGTGAAGTCCAAATGCATGTCAATAGTCCATCCAAAGGAGAAACAAGATTTGGTGATGGATGCATGGGATGTTGTTGTGAATTCTTCTAATGAGAGTGAGTATATGCAGCGACTGGCATTATTTGAAAAAGTTTGCTCTGGTTTTCCTAATTTTGGTGAATATGTGAAAAATATGTGGCTGATTCCACACAAGGAAAAGTTTGTCACTTCATGGACAAATCAGGTGATGCATTTGGGTAACACAACAACCAATAGGGTTGAGTCAACAAATTGTAAGTTAAAGAATTTGCTTCAAGATAGCAAGGAAGATATGTGTAGTTATTGGGATGCTATGAATGACATGATTACTTTGCAACACACAGAGATTAAGTTGTCCTTTGAGAAAAGCATAAATGTAGTGGATCATATGCATAATACTCCATTATTCATCAAACTGCAAGGACTTGTATCAAGGAGTGCATTGAGTCATATAACTGACGAGTATGACCGAGTTAAGGCTGTTGGTACTGATAGTTCTAAATGTTATTGCATAGTCAGAACTACACATGGTCTTCCTTGTGCATGTGAACTTGCTAAGTACAGTACAATGTGTCATCCTATTCCCTTGGAGGCAATTCACGTTCACTGGAAGAAGTTAAACTTTATTGATGGAGGAATGAATGATGAGGAGTATGAGTTATCGTTGCAACCTGAATTGGATGCCTTGCTCAAGAGATTTCAGGAACTTGATTGTGCTGGGAAATTAGTTCTAAAGGCTAAATTACATGAACTAGCATTTCCTGATACAACTTCAAAGTGTCCAACTCCTACAGTGGTAAGAATAAAGGGTGCTCCAAAAAGAGACAGATCAATTCATTCTGATATTTCACAATGGGAGCATGTTGACACAATGCGTCCTACCCATAGTGGCTCCTCATCTTGCCCTTCATCTCATCAACTAGTCCATGATTCTAAACGAAGAAGAGTTCTGTCACTGATGGACCAATTTCCGATTCAGATCCATCCGTTTATTGAAGAAATTATTGATGTGAAAGCAGATTCAAATTGTGGTTACCGCGCTGTTGCTGCTCAACTTGGTATGGGTGAGGAATCATGGGCTTTAGTTCGTCAGGATTTGATCAGAGAGCTTCAGCAGTGGCAAGATATTTATGCCAAACTCTTTGGTAGCAATGATCGGGTGGCTGAACTGAGGCAATCTTTGTATGTTGACAAGGAGACATCTATTAAAAAGTGGATGACTATACCAGATATGGGTTATGTAATTGCCTCAAGATACAACGTGGTTCTAGTTGCTTTATCCTTGAAGGAGTCCATGACATTTTTCCCTCTTAGAGGACGACCACCACTATCTGAGTCAAGGCACCGACTTATTGCCATTGGGTTGGTCCATGATTGTCACTTTGTACAGGTTGCTTTGAAGGCTGAGTCGCCATTACCTCCCACTGCGTTGCAGTGGTCGAGATACTGCAGTGCTGAATCTCGTTCTTGGGAAACTTCATATGTTAATCGAATGGAACATTTTAGGTCATTGTTTCCACAAAAAAGAAATGATTATGTAAACGTTATTGGGGACTAA 2598 0.3899 MSKEVNKQIVGATNKSVDCSDAFNTTEIFPSRDAMLNWARDVAKENGFVLIILRSETSTKPTRTTRRNQRKTFVILGCDRSGKYRGLYKNALSQKVNSTRKCECPFRLRGKALKKAEGWTVKVMCGCHNHELEETLVGHPYAGRLSAEEKSLVDDMTKNMMKPKDILLTLKDYNMDNVTTIKQIYNARHAYRSSQKGLEMQYLLKLLERERYVYWHRKVDDSNVIRDIFWTHPDAIKLLGAFNTVLIIDSIYTTTRYPLPLLEIVGVTSTELTFSVAFAFVESELADNFTWALQKLRGLIVKDEDIPQVIVTNRDISLMNAVQVVFPSSSNLLCRSHINKNVKSKCMSIVHPKEKQDLVMDAWDVVVNSSNESEYMQRLALFEKVCSGFPNFGEYVKNMWLIPHKEKFVTSWTNQVMHLGNTTTNRVESTNCKLKNLLQDSKEDMCSYWDAMNDMITLQHTEIKLSFEKSINVVDHMHNTPLFIKLQGLVSRSALSHITDEYDRVKAVGTDSSKCYCIVRTTHGLPCACELAKYSTMCHPIPLEAIHVHWKKLNFIDGGMNDEEYELSLQPELDALLKRFQELDCAGKLVLKAKLHELAFPDTTSKCPTPTVVRIKGAPKRDRSIHSDISQWEHVDTMRPTHSGSSSCPSSHQLVHDSKRRRVLSLMDQFPIQIHPFIEEIIDVKADSNCGYRAVAAQLGMGEESWALVRQDLIRELQQWQDIYAKLFGSNDRVAELRQSLYVDKETSIKKWMTIPDMGYVIASRYNVVLVALSLKESMTFFPLRGRPPLSESRHRLIAIGLVHDCHFVQVALKAESPLPPTALQWSRYCSAESRSWETSYVNRMEHFRSLFPQKRNDYVNVIGD 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1006g00045 865 ProSiteProfiles OTU domain profile. 679 814 IPR003323 -
Vium1006g00045 865 Pfam MULE transposase domain 245 341 IPR018289 -
Vium1006g00045 865 CDD OTU 680 808 - -
Vium1006g00045 865 PANTHER SWIM-TYPE DOMAIN-CONTAINING PROTEIN 26 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1006g00045 Vium-Chr1006 269683 275418 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium1006g00045 MULE 5.2e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1006g00045 - - gmx:100805365 1392.48