Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1006g00033 ATGGGAGGCGAAGGAAGGGCGGCGATGATGAAGAAGAAGAAGAACACAAAATCTGGGGGCTTCGAGTCACTGGGTCTGAGTCCGAATGCGTTCAAGGGAATCAAGCGCAAAGGGTACAAAGTTCCCACTCCCATTCAGCGCAAGACCATGCCCCTCATCCTCTCTGGCTCGGACGTCGTTGCCATGGCTCGCACCGGCTCCGGCAAAACGGCTGCGTTTCTCGTCCCCATGATTCAGCGCCTCAACCAGCACATCCCTCAGTCTGGAGTCAGAGCCCTGATTCTGTCTCCCACTAGGGACCTCGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGCCCACTTCACAGACCTTCGTATCAGTTTGTTGGTTGGCGGCGATAGCATGGAGAGTCAGTTTGAGGAATTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGCAGGCTCATGCATCATTTGTCGGAAGTTGATGACATGTCCTTGCGCAGCGTCGAGTACGTTGTTTTCGATGAGGCCGATTGTTTGTTTGGCATGGGTTTTGCCGAGCAGTTGCATAAGATTCTTGCTCAGCTCGGGGAGAATCGCCAGACCTTGCTTTTTAGTGCCACATTACCCAGTGCTCTTGCTGAATTTGCAAAGGCTGGTCTGAGAGACCCTCAGCTTGTTCGCCTCGACCTGGAGACTAAGATCAGCCCGGACTTGAAGCTCGCCTTCTTCACCTTGAGGCAGGAGGAGAAGTACCCCGCCCTGCTTTACTTGATCAGGGAACATATTGGTTCTGATGAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTAGAGTTTCTCAATGTCTTGTTTCGCCAAGAGGGTATTGAGCCGTCTGTGTGTTATGGCGACATGGATCAGGATGCTCGAAAAATCCATGTATCCAGGTTTAGGTCTAGGAAGACCATGTTGTTGATTGTCACCGACGTTGCGGCTCGTGGCATCGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCCCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGGACTGGTACTGCATATTCTTTTGTGACTCCTGAGGATATGGCCTACCTCTTGGATCTTCATTTGTTTCTTTCAAAACCCATCAAACCTGCTCCCACTGAAGAAGAGCTCTTGCAGGATATGGATGGTGTAATGTCTAGATGTGATCAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATTGACCTTTTTTCAGACAGAGTCAGGGAAGTTATGGATAGTTCTGCAGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCTGCCAAGGAGTCCATCAGAAGAGTAAAGGATTTGCCTCGTGAAGGGCTGCATCCAATGTTCATGAAGGTGTTGGAAACGGGAGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAGAAGTTTAGGCCAAAACAAACCATTTTGGAAGCCGAAGGAGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCCGGGCAATGGGGCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTCCACGAACAACAGCAATCTAAGGATAATATGGAAAAGGAGGAAATCGAATCAGAACTCAATCCTTCCATGGAGAAAGGAAGAAAAGCAGCACGTGGTTCTAAGAGAAAGACCCAAAGCTTCAAGGATGAAGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCCAATGAAGACTTTGCTTCAAATAGATTGGACTCCGCTGTCCTTGATCTAGTGGCAGATGATGGTGCTGGTATTCACAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGATCGTGTTGCTGCAAACGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGTTTGTATAAGAAGTGGAAAGAACGTTCACATGGTAAGATATCACTTAGAGGGACAAACGACGGTGATCCTCAGGAATCAACAAGTTTCGCAGGATCTTACCAAAGAGGTCGTAGGAATTTTAGAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAAAGGCAGCAAAAGGCCAACAGGACTTCTTATATCAAAAGCAAGTCGACGAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAGTGGTAAAAGAAGAAAAGCCAAATAG 2346 0.4578 MGGEGRAAMMKKKKNTKSGGFESLGLSPNAFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIQRLNQHIPQSGVRALILSPTRDLALQTLKFTKELAHFTDLRISLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYPALLYLIREHIGSDEQTLIFVSTKHHVEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEELLQDMDGVMSRCDQAMANRETIYGRFPQKVIDLFSDRVREVMDSSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMKVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWGDVMKRKRAIHENIINLVHEQQQSKDNMEKEEIESELNPSMEKGRKAARGSKRKTQSFKDEDHYISSIPKNQHMEAGLSVKANEDFASNRLDSAVLDLVADDGAGIHKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGLYKKWKERSHGKISLRGTNDGDPQESTSFAGSYQRGRRNFRGSKKQHSMPNAHVRSEIKDMDQIRKERQQKANRTSYIKSKSTKGKKFGKNGKSGKRRKAK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1006g00033 781 CDD SF2_C_DEAD 245 366 - -
Vium1006g00033 781 Coils Coil 540 560 - -
Vium1006g00033 781 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 396 IPR001650 -
Vium1006g00033 781 MobiDBLite consensus disorder prediction 730 754 - -
Vium1006g00033 781 MobiDBLite consensus disorder prediction 699 714 - -
Vium1006g00033 781 Pfam Helicase conserved C-terminal domain 247 357 IPR001650 -
Vium1006g00033 781 SMART DBP10CT_2 626 688 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vium1006g00033 781 Pfam DBP10CT (NUC160) domain 626 687 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vium1006g00033 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 375 IPR027417 -
Vium1006g00033 781 MobiDBLite consensus disorder prediction 680 695 - -
Vium1006g00033 781 MobiDBLite consensus disorder prediction 1 21 - -
Vium1006g00033 781 MobiDBLite consensus disorder prediction 668 781 - -
Vium1006g00033 781 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 19 47 IPR014014 GO:0003724
Vium1006g00033 781 SMART ultradead3 38 245 IPR014001 -
Vium1006g00033 781 Gene3D - 4 226 IPR027417 -
Vium1006g00033 781 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 223 IPR014001 -
Vium1006g00033 781 MobiDBLite consensus disorder prediction 760 781 - -
Vium1006g00033 781 Pfam DEAD/DEAH box helicase 43 210 IPR011545 GO:0003676|GO:0005524
Vium1006g00033 781 Gene3D - 238 462 IPR027417 -
Vium1006g00033 781 MobiDBLite consensus disorder prediction 551 588 - -
Vium1006g00033 781 CDD DEADc_DDX54 19 224 IPR033517 -
Vium1006g00033 781 SMART helicmild6 276 357 IPR001650 -
Vium1006g00033 781 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 10 691 - -
Vium1006g00033 781 MobiDBLite consensus disorder prediction 552 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1006g00033 Vium-Chr1006 198494 203710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1006g00033 21 390 Eukaryotic Initiation Factors Gene Family AT1G72730 31.989 4.95e-57 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1006g00033 K14808 - gmx:100806274 1368.21