Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1006g00014 ATGGCTTCTCTGCTCCCTCCAACTCCAACTGCTACTTCCACGCTCAAACACAGCCAAATGGCCTCTTCCATGAAGCTCACAACTCCAAACAATGCTTCTTTCTTGCAAAACTCAAACCACCGTTTGAAGAGCAACTCTGCAAAGTGCCATGCAGTGTTTGGTGATGTGGCCAAAGGGTTGGTGGAGAACAGTGTTGGCATGGACCAGTTTCAAAGTATCCAATCGGGAATAGTGCAGTTTGAAAGAGTGACTGAAGGGTTATCTGACATGCAGAGGTGGGCGGTTCTCGTGTTTGGTGGGTTGACGTGGATTTACCTGACTGCGAGGCCAGGTGTGCTTGTTGGTGCCATTGATGCATACATTTTGGCCCCTCTTCAACTGGGGTTGGACAATTTGGTTGGAAGGAGGAACTTGAAGAGGAGTGACTTTGTGGTTGGAGAAAAGCTTGGTGAAGGGTCTTTAGGTGTTGTCTATTCGGGTGTTTTGGTTCCGAAGAATGGGAATGGGAATAATGGGAGTGTTGATTTGGTGCAGAAGAGGGGAAGAGGCAAGACAACGCAGGTGGAACCCAAGTCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTGGAAATTCAAGGTGCTGCGGAGTTTGGTGATTATGAGGAGTGGTTCAATTACAGACTCTCCAGAGCAGCTCCTGAAACATGTGCTAAGTTTCTTGGAAGTTTTGTAGCTGATAAAACAAATTCACAGTTTACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGGGATCGCACTCTTGCTGATTACATGAAGGATCGAAACTTTCCTTCAAACTTAGAACCTGTGATGTTTGGACGTGTTCTGCAAGGTGTTGACTCTTCAAAACGAAATGCATTGATCATCAAACAAATACTGCGCCAGATCATTACATCTCTGAGGAAAATTCATGATAATGGCATTGTTCACAGGGATGTAAAGCCAGCCAACTTAGTGGTTACTAAACGAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACTTGCGGATTGGAAAGAATTATATTCCCAACCGTACCCTTTTAGATCCTGACTATTGCCCCCCAGAATTATATGTACTCCCAGAAGAAACACCAAGTCCACCACCAGAACCAATTGCTGCTTTCCTTTCTCCAATCCTTTGGCAGTTAAACAGCCCTGATTTGTTTGATATGTATTCAGCTGGGATTGTACTTCTTCAAATGGCAATTCCATCCTTGAGGTCTTCTGCTGCTTTGAAGAATTTCAACTTGGAACTAAAAAACTGTGGATATGATCTGAAAAAATGGAGGGACTATACTCGCAACAGGCCTGACTTCCAAATTCTAGATGGTGAATCTGGTAGAGGGTGGGACTTAGCTACAAGGCTTGTATCTGAGAGAGGTTCCCTACGAAGAGGACGTTTATCTGCTGCTGCAGCTCTGAGACATCCTTATTTTCTTCTGGGTGGTGATCAGGCAGCTGCAGTACTTTCAAAACTAAGCTTAAGCAGAAAGTGA 1530 0.4425 MASLLPPTPTATSTLKHSQMASSMKLTTPNNASFLQNSNHRLKSNSAKCHAVFGDVAKGLVENSVGMDQFQSIQSGIVQFERVTEGLSDMQRWAVLVFGGLTWIYLTARPGVLVGAIDAYILAPLQLGLDNLVGRRNLKRSDFVVGEKLGEGSLGVVYSGVLVPKNGNGNNGSVDLVQKRGRGKTTQVEPKSKDKVILKKVKVEIQGAAEFGDYEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLEPVMFGRVLQGVDSSKRNALIIKQILRQIITSLRKIHDNGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYIPNRTLLDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSSAALKNFNLELKNCGYDLKKWRDYTRNRPDFQILDGESGRGWDLATRLVSERGSLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLSRK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1006g00014 509 Pfam Protein kinase domain 297 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1006g00014 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Vium1006g00014 509 ProSiteProfiles Protein kinase domain profile. 143 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1006g00014 509 SMART serkin_6 143 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1006g00014 509 MobiDBLite consensus disorder prediction 1 21 - -
Vium1006g00014 509 Gene3D Phosphorylase Kinase; domain 1 131 257 - -
Vium1006g00014 509 SUPERFAMILY Protein kinase-like (PK-like) 139 491 IPR011009 -
Vium1006g00014 509 Gene3D Transferase(Phosphotransferase) domain 1 288 492 - -
Vium1006g00014 509 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 42 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1006g00014 Vium-Chr1006 80415 84579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1006g00014 167 344 MAP Kinase Kinase Gene Family AT4G29810 25.698 1.08e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vium1006g00014 Pkinase 2.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1006g00014 - - gmx:100788727 786.563