Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1006g00012 ATGGAACGTAATGCTCCAAACATTCCCCCCTCTGAAACTTCCCATCCTCGCCGCAACAGGGTTCGTCCCAAAAGCAGCGTCCAATTTGATGATAACACCCTCTTTCATTATGACAATGGCAACGTCATCTATGTTAATGATCCCACCAAGACTAATGAAAAGTATGAGTTTTGTGGGAATGACATCCGAACCAGCAGATACACTCTTCTCAACTTCTTGCCCAAGAATCTGTTCATTCAGTTCCACCGGGTCGCTTATCTCTATTTCCTTGCCATTGCTGCCCTGAATCAGCTTCCTCCACTAGCTGTTTTCGGCCGAACCGTGTCCCTTTTCCCCCTATTGTTTGTGCTTTGCGTCACTGCTATCAAGGATGCCTACGAGGATTGGCGCAGGCACAGGTCAGATTGCTATGAAAACAATCGTGAGTGTCTGGTTCTTCAATCGGCTCAGTTCCGTTCCAAGAGATGGAAAAATGTGCAGGCTGGTGATGTGATTAAAATCTTAGCCGATGAGATGATTCCTGCTGACATGGTCTTGCTGGGGACAAGCGATCCTAGTGGGGTTGCTTATATTCAAACAATGAATCTGGATGGTGAATCGAATTTGAAGACACGGTTTGCCAAGCAAGAAACAGTTTCAGCGTTTTTGCAAGATGCTTGTGCTGTCTCTGGAGTTATTAGATGTGAACCACCTAATCGGAATATCTATGAGTTCACTGCCACCATGGAGTTAAATGGCCATAAGATTCCCCTTAACCAGTCAAACATTGTTCTGCGTGGTTGCATGCTGAAGAACACGGATTGGATAATTGGTGTTGTGGTCTATGCAGGACAGCAAACAAAAGCAATGTTGAACAGTGCAGCTTCCCCTTCCAAGAGAAGCAAACTGGAAAGTTACATGAATAGAGAAACTTTGTGGTTGTCAGTTTTTCTTTTTATCATGTGCGCAGTTGTTTCCCTAGGGATGGGTCTCTGGCTGGTACGCCATAAGCATGAGCTTGATACCTTGCCTTACTACAGAAAAAAATTCTTCAACAAAGGGCCAAATGAGGGAAGGAAATACAGGTACTATGGGATAACAATGGAAACTTTCTTCTCCTTTTTGAGCTCTATTATTGTGTTTCAGATAATGATACCAATATCTCTATATATCACAATGGAGTTAGTTCGATTGGGCCAGTCATACTTCATGATAGAGGACAAGGATATGTACGATTCTAAATCTGGATCAAGGTTCCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTACGTGTTTTCTGACAAGACAGGAACTCTAACAGAAAACAAAATGGAGTTTCAGAGAGCCAGTATTCATGGAAAGAGCTACGGGAGCTCCTTGCATACAGATGATGAAAGTACAGAAGCAGCAGCCAATAACAGTAAACGAAAATGGAAACTCAAATCTGAAACTCCTGTTGATTCTGAACTAATGGCATTGTTGCGGAAAGACTCAAATTTAGATGAAAGAATTGCTGCTCATGAGTTTTTCCTCACATTGGCGGCTTGTAATACTGTGATCCCCATTATCAGTAGTGGTAAAGTTTCCAGTTGTGGAAAAGATGAATCAAATCATGAAATAGAAGGTATTGATTACCAGGGAGAGTCTCCTGATGAACAAGCTCTAGTTTCAGCTGCATCTGCATATGGATATACTCTATTTGAGCGAACATCTGGAAATATTGTTCTTGATGTCAATGGTGAGAAACTCAGGTTGGACGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGGATGTCAGTTATTCTCCGGTTTCCTGATAATGTTGTTAAGGTGTTGGTTAAAGGCGCTGACAGTTCAATGTTTAGCATTTTAGCTCCTGACAAAGAAGGAAACAACGGAATACAGCATGAAACTCAGAGTCATTTAAGTGAATATTCTATGGAAGGTTTACGAACTCTTGTAGTTGGCTCCAGGGATCTTTCAGATGCTGAATTTGAGGAGTGGCAAAACATGTATGAAGATGCAAGCACTTCATTGACTGATCGAGCTGCAAAACTACGTCAAACAGCGGCTCTGATAGAATGCAACCTAAAGCTTCTCGGAGCAACTGGAATTGAGGACAAGCTGCAGGAGGGTGTGCCAGAAGCCATTGAGTCCATGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAGGAGACTGCAATTTCAATTGGTCTTTCTTGTAAACTTCTGAGTAGAGACATGCAGCAGATCATTATAAATGGCACTTCAGAGGTTGAGTGCAGAAAGCTCTTGACTGATGCTATAGCAAAGTATGGATTGAAATCTTCAAGTAGAGAACATCAGAATCTGAAGTGCAAAACTGATTCTAGACATGATTGCCCTGATATTCACGATAATACAAAATCATTGGGCTTGCCCAAGTCAAATGCATGGAAAAAAGAAGGAACTACTGCTCCATTGGCACTCATAATTGATGGAACCAGTTTAGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTCAAACTTGCAACTTCCTGTAGCGTTGTGCTATGCTGCCGTGTTGCACCCTTGCAGAAAGCAGGAATTGTTGATCTGATAAAAAGCCGCACAGATGATCTGACATTAGCTATTGGTGATGGGGCAAATGATGTGTCGATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCTGTGATGGCATCAGATTTTGCCATGGCACAATTCCAGTTCTTGAAAAAATTGCTTCTGGTTCACGGACACTGGAATTATCAGCGTGTTGGTTATCTTGTTCTGTACAACTTTTACCGCAATGCTGTCTTTGTGTTGATGCTATTCTGGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTGACAGAGTGGAGTAGTGTATTTTATTCTGTTATATACACATCTATCCCCACTATCATTGTTGGTGTGTTGGACAAAGACTTGAGTCATAGTACACTCTTGCTGTATCCAAAATTATATGGTACAGGTCACAGGCATGAGGCTTACAATTTGCAATTATTTTGGATTACAATGATTGACACGTTATGGCAGAGTCTTGCTCTCTTCTACATTCCCGTATTCATCTATAAGGACAGCACAATTGATATATGGAGCATGGGCAGTTTATGGACAATTTCAGTTGTTATCCTTGTAAATGTACACCTGGCTCTGGACATTAACCAGTGGGCACTGGTTAGTCATGTTGCTGTATGGGGATCAATAATCGTTACATATGGCTGCGTGGTGATATTGGATTCTATACCTGTCTTTCCCAATTACGGGACTATTTATCATTTGGCAAGTTCCCCTACATATTGGATGACAATTTTTCTTATAATAATCGTGGCATTGCTACCTCGCTTTTCTTGCAAAGCCTTTTATCAAGCCTTTTGTCCTTCAGATATCCAGATAGCCAGAGAAGCTGAGACAATGACAAAACAGCATGATAATTTGCAACCAAAGTGTCCAGTTTCCAAATAA 3537 0.4162 MERNAPNIPPSETSHPRRNRVRPKSSVQFDDNTLFHYDNGNVIYVNDPTKTNEKYEFCGNDIRTSRYTLLNFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDAYEDWRRHRSDCYENNRECLVLQSAQFRSKRWKNVQAGDVIKILADEMIPADMVLLGTSDPSGVAYIQTMNLDGESNLKTRFAKQETVSAFLQDACAVSGVIRCEPPNRNIYEFTATMELNGHKIPLNQSNIVLRGCMLKNTDWIIGVVVYAGQQTKAMLNSAASPSKRSKLESYMNRETLWLSVFLFIMCAVVSLGMGLWLVRHKHELDTLPYYRKKFFNKGPNEGRKYRYYGITMETFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDKDMYDSKSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFQRASIHGKSYGSSLHTDDESTEAAANNSKRKWKLKSETPVDSELMALLRKDSNLDERIAAHEFFLTLAACNTVIPIISSGKVSSCGKDESNHEIEGIDYQGESPDEQALVSAASAYGYTLFERTSGNIVLDVNGEKLRLDVLGLHEFDSVRKRMSVILRFPDNVVKVLVKGADSSMFSILAPDKEGNNGIQHETQSHLSEYSMEGLRTLVVGSRDLSDAEFEEWQNMYEDASTSLTDRAAKLRQTAALIECNLKLLGATGIEDKLQEGVPEAIESMRQAGIKVWVLTGDKQETAISIGLSCKLLSRDMQQIIINGTSEVECRKLLTDAIAKYGLKSSSREHQNLKCKTDSRHDCPDIHDNTKSLGLPKSNAWKKEGTTAPLALIIDGTSLVYILEKELESELFKLATSCSVVLCCRVAPLQKAGIVDLIKSRTDDLTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMAQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTEWSSVFYSVIYTSIPTIIVGVLDKDLSHSTLLLYPKLYGTGHRHEAYNLQLFWITMIDTLWQSLALFYIPVFIYKDSTIDIWSMGSLWTISVVILVNVHLALDINQWALVSHVAVWGSIIVTYGCVVILDSIPVFPNYGTIYHLASSPTYWMTIFLIIIVALLPRFSCKAFYQAFCPSDIQIAREAETMTKQHDNLQPKCPVSK 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1006g00012 1178 Gene3D - 696 924 IPR023214 -
Vium1006g00012 1178 ProSitePatterns E1-E2 ATPases phosphorylation site. 432 438 IPR018303 -
Vium1006g00012 1178 Gene3D - 440 476 IPR023299 GO:0000166
Vium1006g00012 1178 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1150 IPR023298 -
Vium1006g00012 1178 Pfam Phospholipid-translocating P-type ATPase C-terminal 912 1152 IPR032630 -
Vium1006g00012 1178 SFLD p-type atpase 414 935 IPR044492 -
Vium1006g00012 1178 CDD P-type_ATPase_APLT_Dnf-like 59 1044 - -
Vium1006g00012 1178 Gene3D - 120 286 - -
Vium1006g00012 1178 PRINTS P-type cation-transporting ATPase superfamily signature 430 444 - -
Vium1006g00012 1178 PRINTS P-type cation-transporting ATPase superfamily signature 884 903 - -
Vium1006g00012 1178 Gene3D - 543 676 IPR023299 GO:0000166
Vium1006g00012 1178 MobiDBLite consensus disorder prediction 453 474 - -
Vium1006g00012 1178 FunFam Phospholipid-transporting ATPase 115 285 - -
Vium1006g00012 1178 Pfam Cation transport ATPase (P-type) 537 621 - -
Vium1006g00012 1178 Gene3D - 413 426 - -
Vium1006g00012 1178 Pfam E1-E2 ATPase 141 388 - -
Vium1006g00012 1178 SUPERFAMILY HAD-like 417 929 IPR036412 -
Vium1006g00012 1178 Gene3D - 427 439 IPR023214 -
Vium1006g00012 1178 NCBIfam phospholipid-translocating P-type ATPase 57 1159 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium1006g00012 1178 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 436 713 IPR023299 GO:0000166
Vium1006g00012 1178 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 1164 - -
Vium1006g00012 1178 SUPERFAMILY Calcium ATPase, transduction domain A 140 282 IPR008250 -
Vium1006g00012 1178 Pfam Phospholipid-translocating ATPase N-terminal 43 108 IPR032631 -
Vium1006g00012 1178 FunFam Phospholipid-transporting ATPase 543 687 - -
Vium1006g00012 1178 MobiDBLite consensus disorder prediction 1 25 - -
Vium1006g00012 1178 NCBIfam HAD-IC family P-type ATPase 362 454 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium1006g00012 1178 NCBIfam HAD-IC family P-type ATPase 854 970 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium1006g00012 1178 SFLD C1.7: P-type atpase like 414 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1006g00012 Vium-Chr1006 73546 79507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1006g00012 38 1163 Primary Pumps ATPases AT5G04930 56.750 0.0 1320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1006g00012 K14802 - gmx:100788740 2053.48