Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium1006g00011 | ATGGAACGTAATGCTCCAAACATTCCCCCCTCTGAAACTTCCCATCCTCGCCGCAACAGGGTTCGTCCCAAAAGCAGCGTCCAATTTGATGATAACACCCTCTTTCATTATGACAATGGCAACGTCATCTATGTTAATGATCCCACCAAGACTAATGAAAAGTATGAGTTTTGTGGGAATGACATCCGAACCAGCAGATACACTCTTCTCAACTTCTTGCCCAAGAATCTGTTCATTCAGTTCCACCGGGTCGCTTATCTCTATTTCCTTGCCATTGCTGCCCTGAATCAGCTTCCTCCACTAGCTGTTTTCGGCCGAACCGTGTCCCTTTTCCCCCTATTGTTTGTGCTTTGCGTCACTGCTATCAAGGATGCCTACGAGGATTGGCGCAGGCACAGGTCAGATTGCTATGAAAACAATCGTGAGTGTCTGGTTCTTCAATCGGCTCAGTTCCGTTCCAAGAGATGGAAAAATGTGCAGGCTGGTGATGTGATTAAAATCTTAGCCGATGAGATGATTCCTGCTGACATGGTCTTGCTGGGGACAAGCGATCCTAGTGGGGTTGCTTATATTCAAACAATGAATCTGGATGGTGAATCGAATTTGAAGACACGGTTTGCCAAGCAAGAAACAGTTTCAGCGTTTTTGCAAGATGCTTGTGCTGTCTCTGGAGTTATTAGATGTGAACCACCTAATCGGAATATCTATGAGTTCACTGCCACCATGGAGTTAAATGGCCATAAGATTCCCCTTAACCAGTCAAACATTGTTCTGCGTGGTTGCATGCTGAAGAACACGGATTGGATAATTGGTGTTGTGGTCTATGCAGGACAGCAAACAAAAGCAATGTTGAACAGTGCAGCTTCCCCTTCCAAGAGAAGCAAACTGGAAAGTTACATGAATAGAGAAACTTTGTGGTTGTCAGTTTTTCTTTTTATCATGTGCGCAGTTGTTTCCCTAGGGATGGGTCTCTGGCTGGTACGCCATAAGCATGAGCTTGATACCTTGCCTTACTACAGAAAAAAATTCTTCAACAAAGGGCCAAATGAGGGAAGGAAATACAGGTACTATGGGATAACAATGGAAACTTTCTTCTCCTTTTTGAGCTCTATTATTGTGTTTCAGATAATGATACCAATATCTCTATATATCACAATGGAGTTAGTTCGATTGGGCCAGTCATACTTCATGATAGAGGACAAGGATATGTACGATTCTAAATCTGGATCAAGGTTCCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTACGTGTTTTCTGACAAGACAGGAACTCTAACAGAAAACAAAATGGAGTTTCAGAGAGCCAGTATTCATGGAAAGAGCTACGGGAGCTCCTTGCATACAGATGATGAAAGTACAGAAGCAGCAGCCAATAACAGTAAACGAAAATGGAAACTCAAATCTGAAACTCCTGTTGATTCTGAACTAATGGCATTGTTGCGGAAAGACTCAAATTTAGATGAAAGAATTGCTGCTCATGAGTTTTTCCTCACATTGGCGGCTTGTAATACTGTGATCCCCATTATCAGTAGTGGTAAAGTTTCCAGTTGTGGAAAAGATGAATCAAATCATGAAATAGAAGGTATTGATTACCAGGGAGAGTCTCCTGATGAACAAGCTCTAGTTTCAGCTGCATCTGCATATGGATATACTCTATTTGAGCGAACATCTGGAAATATTGTTCTTGATGTCAATGGTGAGAAACTCAGGTTGGACGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGGATGTCAGTTATTCTCCGGTTTCCTGATAATGTTGTTAAGGTGTTGGTTAAAGGCGCTGACAGTTCAATGTTTAGCATTTTAGCTCCTGACAAAGAAGGAAACAACGGAATACAGCATGAAACTCAGAGTCATTTAAGTGAATATTCTATGGAAGGTTTACGAACTCTTGTAGTTGGCTCCAGGGATCTTTCAGATGCTGAATTTGAGGAGTGGCAAAACATGTATGAAGATGCAAGCACTTCATTGACTGATCGAGCTGCAAAACTACGTCAAACAGCGGCTCTGATAGAATGCAACCTAAAGCTTCTCGGAGCAACTGGAATTGAGGACAAGCTGCAGGAGGGTGTGCCAGAAGCCATTGAGTCCATGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAGGAGACTGCAATTTCAATTGGTCTTTCTTGTAAACTTCTGAGTAGAGACATGCAGCAGATCATTATAAATGGCACTTCAGAGGTTGAGTGCAGAAAGCTCTTGACTGATGCTATAGCAAAGTATGGATTGAAATCTTCAAGTAGAGAACATCAGAATCTGAAGTGCAAAACTGATTCTAGACATGATTGCCCTGATATTCACGATAATACAAAATCATTGGGCTTGCCCAAGTCAAATGCATGGAAAAAAGAAGGAACTACTGCTCCATTGGCACTCATAATTGATGGAACCAGTTTAGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTCAAACTTGCAACTTCCTGTAGCGTTGTGCTATGCTGCCGTGTTGCACCCTTGCAGAAAGCAGGAATTGTTGATCTGATAAAAAGCCGCACAGATGATCTGACATTAGCTATTGGTGATGGGGCAAATGATGTGTCGATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCTGTGATGGCATCAGATTTTGCCATGGCACAATTCCAGTTCTTGAAAAAATTGCTTCTGGTTCACGGACACTGGAATTATCAGCGTGTTGGTTATCTTGTTCTGTACAACTTTTACCGCAATGCTGTCTTTGTGTTGATGCTATTCTGGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTGACAGAGTGGAGTAGTGTATTTTATTCTGTTATATACACATCTATCCCCACTATCATTGTTGGTGTGTTGGACAAAGACTTGAGTCATAGTACACTCTTGCTGTATCCAAAATTATATGGTACAGGTCACAGGCATGAGGCTTACAATTTGCAATTATTTTGGATTACAATGATTGACACGTTATGGCAGAGTCTTGCTCTCTTCTACATTCCCGTATTCATCTATAAGGACAGCACAATTGATATATGGAGCATGGGCAGTTTATGGACAATTTCAGTTGTTATCCTTGTAAATGTACACCTGGCTCTGGACATTAACCAGTGGGCACTGGTTAGTCATGTTGCTGTATGGGGATCAATAATCGTTACATATGGCTGCGTGGTGATATTGGATTCTATACCTGTCTTTCCCAATTACGGGACTATTTATCATTTGGCAAGTTCCCCTACATATTGGATGACAATTTTTCTTATAATAATCGTGGCATTGCTACCTCGCTTTTCTTGCAAAGCCTTTTATCAAGCCTTTTGTCCTTCAGATATCCAGATAGCCAGAGAAGCTGAGACAATGACAAAACAGCATGATAATTTGCAACCAAAGTGTCCAGTTTCCAAATAA | 3537 | 0.4162 | MERNAPNIPPSETSHPRRNRVRPKSSVQFDDNTLFHYDNGNVIYVNDPTKTNEKYEFCGNDIRTSRYTLLNFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDAYEDWRRHRSDCYENNRECLVLQSAQFRSKRWKNVQAGDVIKILADEMIPADMVLLGTSDPSGVAYIQTMNLDGESNLKTRFAKQETVSAFLQDACAVSGVIRCEPPNRNIYEFTATMELNGHKIPLNQSNIVLRGCMLKNTDWIIGVVVYAGQQTKAMLNSAASPSKRSKLESYMNRETLWLSVFLFIMCAVVSLGMGLWLVRHKHELDTLPYYRKKFFNKGPNEGRKYRYYGITMETFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDKDMYDSKSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFQRASIHGKSYGSSLHTDDESTEAAANNSKRKWKLKSETPVDSELMALLRKDSNLDERIAAHEFFLTLAACNTVIPIISSGKVSSCGKDESNHEIEGIDYQGESPDEQALVSAASAYGYTLFERTSGNIVLDVNGEKLRLDVLGLHEFDSVRKRMSVILRFPDNVVKVLVKGADSSMFSILAPDKEGNNGIQHETQSHLSEYSMEGLRTLVVGSRDLSDAEFEEWQNMYEDASTSLTDRAAKLRQTAALIECNLKLLGATGIEDKLQEGVPEAIESMRQAGIKVWVLTGDKQETAISIGLSCKLLSRDMQQIIINGTSEVECRKLLTDAIAKYGLKSSSREHQNLKCKTDSRHDCPDIHDNTKSLGLPKSNAWKKEGTTAPLALIIDGTSLVYILEKELESELFKLATSCSVVLCCRVAPLQKAGIVDLIKSRTDDLTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMAQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTEWSSVFYSVIYTSIPTIIVGVLDKDLSHSTLLLYPKLYGTGHRHEAYNLQLFWITMIDTLWQSLALFYIPVFIYKDSTIDIWSMGSLWTISVVILVNVHLALDINQWALVSHVAVWGSIIVTYGCVVILDSIPVFPNYGTIYHLASSPTYWMTIFLIIIVALLPRFSCKAFYQAFCPSDIQIAREAETMTKQHDNLQPKCPVSK | 1178 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium1006g00011 | 1178 | Gene3D | - | 696 | 924 | IPR023214 | - | |
| Vium1006g00011 | 1178 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 432 | 438 | IPR018303 | - | |
| Vium1006g00011 | 1178 | Gene3D | - | 440 | 476 | IPR023299 | GO:0000166 | |
| Vium1006g00011 | 1178 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 57 | 1150 | IPR023298 | - | |
| Vium1006g00011 | 1178 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 912 | 1152 | IPR032630 | - | |
| Vium1006g00011 | 1178 | SFLD | p-type atpase | 414 | 935 | IPR044492 | - | |
| Vium1006g00011 | 1178 | CDD | P-type_ATPase_APLT_Dnf-like | 59 | 1044 | - | - | |
| Vium1006g00011 | 1178 | Gene3D | - | 120 | 286 | - | - | |
| Vium1006g00011 | 1178 | PRINTS | P-type cation-transporting ATPase superfamily signature | 430 | 444 | - | - | |
| Vium1006g00011 | 1178 | PRINTS | P-type cation-transporting ATPase superfamily signature | 884 | 903 | - | - |
Showing 1 to 10 of 28 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium1006g00011 | K14802 | - | gmx:100788740 | 2053.48 |
Showing 1 to 1 of 1 entries