Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1006g00010 ATGGATCAAAGAAAGGTGTTGGAGGAGCTTCTGAGAGGTTATGAATCTGCTACTAAACTTCGAGTAGTGATGAATGAAAAAGATGAGTCAGAAATAAGAACCCTTCAATGTCTTGCCAAGAACGTGCTTAGATCCTTCACCAACACCCTCTTCCTCTTGAACTCTCATCACCATCATCTCTCTCATCTTCTCTCTCCCACCAAATCTCAGGACTCCCAAGAAAGTTCCAAGACTTTCACCAGTTTCAATAACAGAAGAGGCTGCTACAAGAGAAAAAGACATCCACAAGAATGGGAGAAGATTTCAGAAGCTCCACCAATTGATGGCCATCAGTGGAGAAAGTATGGCCAAAAAGAGATCCTCAAAGCCAAATACTCAAGGAACTATTACAGGTGCACTCACAAGTATGATCAGAATTGTCAAGCAACAAAACAAGTGCAAAGAATTCAAGAGAATCCTCCCTTGTACAAGACCACATATTTAGGCCACCACACATGCAATGACTTGCTAAGTTCTGAAATCATACTTGATTCCAATGATTCTCTTTCTGACACTTCCATACTGATAAGTTTTAACAACAGCTTCCCTCCAACCAAGCAAGAATGTCCCTTTTTATCATCCTCTTCTTCTTCATCATCATCATCTATCAATCCCTCACCATCACTGATCACAGAGGAGATAATTCCATCATGTTATGATTACATGCTACCCCCAGAACCCACTTTCGATGATTACTCAATGCACAATAATGTCACTCCACCACTCGATCACTGGGATGATATGTCTTCTGCCTTGTGTGATTCTGACATTGAAGAAATCAAACGTTTGTTAATGGATTCGGATGATTGA 849 0.4064 MDQRKVLEELLRGYESATKLRVVMNEKDESEIRTLQCLAKNVLRSFTNTLFLLNSHHHHLSHLLSPTKSQDSQESSKTFTSFNNRRGCYKRKRHPQEWEKISEAPPIDGHQWRKYGQKEILKAKYSRNYYRCTHKYDQNCQATKQVQRIQENPPLYKTTYLGHHTCNDLLSSEIILDSNDSLSDTSILISFNNSFPPTKQECPFLSSSSSSSSSSINPSPSLITEEIIPSCYDYMLPPEPTFDDYSMHNNVTPPLDHWDDMSSALCDSDIEEIKRLLMDSDD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1006g00010 282 ProSiteProfiles WRKY domain profile. 108 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1006g00010 282 SMART WRKY_cls 106 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1006g00010 282 Pfam WRKY DNA -binding domain 108 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1006g00010 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 200 IPR044810 GO:0003700
Vium1006g00010 282 SUPERFAMILY WRKY DNA-binding domain 104 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1006g00010 282 Gene3D WRKY domain 96 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1006g00010 Vium-Chr1006 65391 66710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1006g00010 5 180 WRKY Transcription Factor Family AT3G56400 36.181 5.46e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1006g00010 WRKY 3.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1006g00010 - - var:108346831 537.724