Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1006g00005 ATGGCAGCTTCAACACTGTGTTTGGCTCTTCTCGTTCCTCTCATCTTCTTCCATAGCTTTCATGCTTCATCTTCCGTCTCCCTCTCCGTAGAGAACTTCAAAGAAGAAGTCATAGTGTCATCACCCAAAGCAACATTCACGGCAGGCTTTTACGCCGTCGGACAAAACGCTTTCTGCTTCGCAGTATGGTACACCCACTCACCAGACACCCTTGTTTGGATCGCCAACCGGGACCAACCGGTTAACGGAAAACGCTCCACGCTCTCCCTTCTCAAAACCGGTAACCTCGTACTCACCGACGCCGGTCAGTTGCAAGTGTGGTCCACCGGCACCGCCACCTCATCCAGACAAGTCCGCTTAAATTTGTACGACACCGGCAACCTCGTACTCCTCGAAGATTCCTCCGACAGCCCTGTTTTGTGGCAGAGCTTCGATTTCCCGACCGACACACTTCTTCCAAACCAGCCTCTGAGAGGGAGCACCAACCTCGTTTCCTCGAGAAGCCGGAGCAACCACTCGTCCGGTTTCTACAGGCTCTTCTTCGACTTCGAGAATGTTCTGCGGCTCATGTACCAGGGCCCTCGAGTTTCTAGCGTTTTCTGGCCCTACGCTTGGCTTCAGAGCAACAACTTCGGTAATGGCAACGGCAGATCCACTTTCAACGATAGCAGGATTGCTGTGCTTGATGAGTTGGGTGGCGTGCTTTCTTCCGACAACTACACTTACAGAACGATCGATTACGGGACGGTGCTTCAGCGGAGATTGACCCTCGATCATGACGGTAATGTGAGGGTCTACAGCATGGTAGATGGACAAAAGAAGTGGGTGGTATCAGGGCTGTTTCGCCCACAACCTTGTTTTATCCATGGCATTTGTGGACCCAACAGTTACTGCACAAATAACCCAACAACTGGCAGAAAGTGTTCCTGCCTTCCAGGTCACAGATGGATTGATAGTCAAGACTGGACTCTAGGTTGCAGACCGAATTTTGATCCTTGGTGCAACACCACTAAGCAAGAGTCTCGTTTCGTGGGCTTATCTGAATTTGATTTTTATGGATATGATTACGGCTTCTATCAGAATCACACTTACGAACAATGTGTGAATCAGTGCTTGAAGTTGTGCGAATGCAAAGGGTTTCAGTTCAGTTTTTCGGACCAAGGTGGTTTCGGTAGTCAGTGCTACCTGAAGACACAGTTGCTGAATGGGCATCATTCAGTAAGTTTCTCGGGATCATTCTTCCTGAGGCTGCCTTTGTCTCAGGACTATGAGAACCCCATCAGTAATGTATTGGTTTGCGGGGGAAATAGCGGAAGAGTGAAAGAACTAGAAAGACCGTATGTGGAAGAAAAAGAAAATGGATCGGTGAGGTTCATGCTGTGGTTTGCGTGTGCCTTGGGAGGACTTGAGGTTCTGTGCTTCTTTCTGGTGTGGTGTTTTCTGTTTAGGAATAATGCTGACAAACAAGCCTATGTTCTTGCTGCGGAAACAGGGTTTAGGAAATTCAGTTACTCTGAATTGAAACAAGCTTCCAAAGGTTTCGGTGAAGAGATTGGAAGGGGTGGTGGAGGTACAGTGTATAAAGGTGTCTTGTCTGATGATCGGGTTGTGGCGATAAAAAGACTACATGAAGTAGCAAGCCAAGGAGAAAGTGAGTTCCTGGCTGAAGTAAGTATCATTGGAAGACTTAACCACATGAACTTAATTGGCATGTTAGGGTTTTGTGCGGAGGGAAAATATAGGTTGTTGGTTTATGAGTACATGGAGAATGGTTCTTTAGCTGAGAACCTTTCATCGAGTTTAAATGTTCTTGATTGGACCAAGAGGTATAACATTGCTTTGGGAACTGCAAGGGGTCTTGCTTACTTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATCAAGCCCCAAAATATACTTCTCGACTCTGATTACCAACCTAAGGTAGCTGATTTTGGGTTGTCTAAGCTACTTAACCGGAACAACCTCGACAATTCAACCTTCTCGAGAATAAGAGGAACAAGAGGCTACATGGCACCGGAGTGGCTTTTCAACTTGCCAATCACTTCCAAGGTGGATGTCTACAGCTATGGCGTTGTTGTCTTGGAGATGATAACTGGAAGGAGCCCAACAGCAGGTATCCAACTCTCAGAATTGGACGCTGAATCACATAATCATGGGAGGTTAGTGACATGGGTGAGGGAGAAAAGGAAGAAAGGGTCAGAAGTGGGATCATCTTGGGTGGATCAAATAGTTGACCCTGCTTTGGGATCAAAGTATGATAGGAATGAAATTGAGATATTAGCTACGGTGGCTTTGGAATGTGTAGAGGAAGAGAAAGATGTGAGACCCAGCATGAGTCATGTTGTTGAGAGGCTCCAAAGTTACGAGCACAATTCTTGA 2409 0.4682 MAASTLCLALLVPLIFFHSFHASSSVSLSVENFKEEVIVSSPKATFTAGFYAVGQNAFCFAVWYTHSPDTLVWIANRDQPVNGKRSTLSLLKTGNLVLTDAGQLQVWSTGTATSSRQVRLNLYDTGNLVLLEDSSDSPVLWQSFDFPTDTLLPNQPLRGSTNLVSSRSRSNHSSGFYRLFFDFENVLRLMYQGPRVSSVFWPYAWLQSNNFGNGNGRSTFNDSRIAVLDELGGVLSSDNYTYRTIDYGTVLQRRLTLDHDGNVRVYSMVDGQKKWVVSGLFRPQPCFIHGICGPNSYCTNNPTTGRKCSCLPGHRWIDSQDWTLGCRPNFDPWCNTTKQESRFVGLSEFDFYGYDYGFYQNHTYEQCVNQCLKLCECKGFQFSFSDQGGFGSQCYLKTQLLNGHHSVSFSGSFFLRLPLSQDYENPISNVLVCGGNSGRVKELERPYVEEKENGSVRFMLWFACALGGLEVLCFFLVWCFLFRNNADKQAYVLAAETGFRKFSYSELKQASKGFGEEIGRGGGGTVYKGVLSDDRVVAIKRLHEVASQGESEFLAEVSIIGRLNHMNLIGMLGFCAEGKYRLLVYEYMENGSLAENLSSSLNVLDWTKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVADFGLSKLLNRNNLDNSTFSRIRGTRGYMAPEWLFNLPITSKVDVYSYGVVVLEMITGRSPTAGIQLSELDAESHNHGRLVTWVREKRKKGSEVGSSWVDQIVDPALGSKYDRNEIEILATVALECVEEEKDVRPSMSHVVERLQSYEHNS 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1006g00005 802 SMART serkin_6 512 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1006g00005 802 FunFam S-receptor-like serine/threonine-protein kinase 482 587 - -
Vium1006g00005 802 ProSiteProfiles Bulb-type lectin domain profile. 24 143 IPR001480 -
Vium1006g00005 802 Gene3D Phosphorylase Kinase; domain 1 479 587 - -
Vium1006g00005 802 ProSiteProfiles Protein kinase domain profile. 512 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1006g00005 802 FunFam Serine/threonine-protein kinase 588 802 - -
Vium1006g00005 802 Gene3D - 29 146 IPR036426 -
Vium1006g00005 802 Gene3D Transferase(Phosphotransferase) domain 1 588 802 - -
Vium1006g00005 802 SMART blect_4 29 147 IPR001480 -
Vium1006g00005 802 ProSiteProfiles PAN/Apple domain profile. 334 418 IPR003609 -
Vium1006g00005 802 PANTHER OS07G0415500 PROTEIN 6 797 - -
Vium1006g00005 802 Pfam D-mannose binding lectin 70 159 IPR001480 -
Vium1006g00005 802 Pfam S-locus glycoprotein domain 240 314 IPR000858 GO:0048544
Vium1006g00005 802 Pfam Protein kinase domain 515 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1006g00005 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vium1006g00005 802 CDD STKc_IRAK 525 796 - -
Vium1006g00005 802 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Vium1006g00005 802 CDD PAN_AP_plant 334 418 - -
Vium1006g00005 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 201 IPR036426 -
Vium1006g00005 802 SUPERFAMILY Protein kinase-like (PK-like) 497 796 IPR011009 -
Vium1006g00005 802 CDD B_lectin 40 147 IPR001480 -
Vium1006g00005 802 PIRSF SRK 1 802 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1006g00005 Vium-Chr1006 28911 32577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1006g00005 502 799 Trihelix Transcription Factor Family AT5G38560 44.518 6.84e-70 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium1006g00005 Pkinase 6.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1006g00005 - - gmx:100808408 1289.25