Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1006g00004 ATGGCACCTTCAACACTGTCTTTCGCTCTTCTCCTTTCTCTCATATTCTTCCATAATTTCCATGCTTCGTCTTCTTTATCTCTTTCCGTCGAGAACTTCAAAGAAGATGTCATAGTGTCATCACCTCAAAAAACATTCACAGCGGGCTTTTACGCCGTCGGACAAAACGCTTTCTGCTTCGCAATATGGTACACGCGCTCCCCGGACACCGTCGTTTGGATGGCCAACCGGGACCGTCCTGTAAACGGAAAACGCTCCACGCTATCCCTTCTCACGACCGGTAACCTCGAACTCACCGACGCTGGCCAGTTCCAAGTGTGGTCCACCAACACCGCCGCCGAATCCAACCGAGTCCAGTTGCGTTTGTACGACAACGGGAACCTCGTACTCCTCGAAAGCCAGAACAGTTCCTCCGAGGTTGTGATATGGCAGAGCTTTGATTTCCCAACCGACACGCTTCTTCCTGGTCAACCTCTGACTAAGAGTGGCAGCTTGGTTTCCTCGAGAAGCGGGAGTAACTACTCCTCCGGTTTCTACAGGCTCTTCTTCGACTCTGAGAATGTTCTTCGCATCATGTACCAGGGTCCTCAAGTTTCCAGCGTTTATTGGCCGGACCCTTGGCTTCAGAACAACAACTTCGGGAACGGTGGCGCCGGAAATGGCAGATCCACTTACAACGATAGCAGGGTCGCTGTGCTTGATGATTTGGGGCACCTGGTTTCTTCCGATAACTTCACTTTCAGAAGCATTGATTACGGCACGGTGCTGCAACGGAGGTTGACCCTCGATCACGACGGTAGTGCGAGGCTGTACAGCAAGAAGGATGGGGAAGAGAAGTGGACAATGGCGGGGGAATTTCGCTCACATCCGTGCTACGCTCATGGGATTTGTGGGGCTAACAGTTATTGCAGATACGACCCTCCCAGTGGTAGAAAGTGTTCGTGCCTCCCAGGTCATTCTTGGGTTGATAGCAAAGACTGGTCTCAAGGTTGTGAACCAACTTTCGAGCATTTGTGCAGCGGCAACAACAGAACCGAGAACGAGTCTCGCTTCTTGCGCATACCTGATGTTGATTTCTACGGATACGACTATGGCTACTTTGGAAATTACACCTATCAACAGTGTGAGAATCTCTGCGCGGAGAAGTGCGAATGCAGAGGGTTTCAACACAGCTTTTCCGTGGAAAATGCTTTTTTTCAGTGCTACCCAAAGACGCATTTGCGTAATGGGAATAGTCAACCGGGTTTCACGGGATCATTCTTCCTGAAGCTTCCTTCATCGTCTCGTGATGAGTTCGAGAACAACATCCAAAATAATGGCTTGGTTTGTGGGGGAGATGATGAGGAGGCAGAGATGCTTAACAGATTGTATGTCCAAGGGGGAGAAAATGGATCGGTGAAGTTCATGCTGTGGTTTGCAAGCGCCTTGGGAGGAGTTGAACTGGTGTGCATCTTTCTGGTGTGGTGTTTCTTGTTTAGGAATAATAAGACGTTACCATCAGGTGCTGAGGGACAAGGGTATGTTCTTGCAGCAGCTGCGGGGTTCAGAAGATTCAGTTACTCTGAGCTGAAACAAGCCACCAAAGGTTTCAGTGAAGAGATAGGAAGGGGTGCTGGAGGTACTGTGTATAAGGGTGTCTTGGAAGATAATCAAGTCGTGGCAATAAAGCGTCTGCATGAAGTAGCAAACCAGGGAGAAAGCGAGTTTCTGGCTGAGGTAAGCATCATTGGAAGGCTTAACCACATGAACTTGATATGCATGTTGGGGTATTGTGCAGAGGGAAAGCATAGGTTGTTGGTTTATGAGTACATGGAGAATGGTTCTTTGGCTCAGAACCTTTCATCAGGTTCAAATGTACTTGGCTGGAGCAAAAGGTATAACATTGCTCTGGGAACAGCAAGGGGTCTGGCCTACTTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGACATCAAGCCCCAAAATATACTTCTTGACTCTGATTATAAACCAAAAGTAGGAGATTTTGGCTTGTCTAAGCTACTTAACAGGAACAACCTCAACAATTCAAGCTTCTCAAGGATAAGAGGAACAAGAGGTTACATGGCACCTGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTGGATGTCTACAGCTATGGCATTGTTGTATTGGAGATGATCACTGGAAGGAGCCCAACAACAGGTGTCCAAATCACAGAGTTAGAAGCAGAGTCACCTCATCATGAGAGGTTGGTGACATGGGTGAGGGAGAAAAGGATGAAAGGATCAGAAAATGGATCATCTTGGGTGGATCAAATCGTTGACCCTGCTTTGGGATCAAACTATTACATGAATGAAGTGGAGATATTGGCAACAGTGGCTTTGGAATGTGTGGAGGAAGAGAAAAATGCCAGGCCCAGCATGAGTCGAGTAGCAGAGAAGCTTCAGAGTCATATGCACACGATTGTTGATGTTTTCAACAAAGAATAG 2478 0.4766 MAPSTLSFALLLSLIFFHNFHASSSLSLSVENFKEDVIVSSPQKTFTAGFYAVGQNAFCFAIWYTRSPDTVVWMANRDRPVNGKRSTLSLLTTGNLELTDAGQFQVWSTNTAAESNRVQLRLYDNGNLVLLESQNSSSEVVIWQSFDFPTDTLLPGQPLTKSGSLVSSRSGSNYSSGFYRLFFDSENVLRIMYQGPQVSSVYWPDPWLQNNNFGNGGAGNGRSTYNDSRVAVLDDLGHLVSSDNFTFRSIDYGTVLQRRLTLDHDGSARLYSKKDGEEKWTMAGEFRSHPCYAHGICGANSYCRYDPPSGRKCSCLPGHSWVDSKDWSQGCEPTFEHLCSGNNRTENESRFLRIPDVDFYGYDYGYFGNYTYQQCENLCAEKCECRGFQHSFSVENAFFQCYPKTHLRNGNSQPGFTGSFFLKLPSSSRDEFENNIQNNGLVCGGDDEEAEMLNRLYVQGGENGSVKFMLWFASALGGVELVCIFLVWCFLFRNNKTLPSGAEGQGYVLAAAAGFRRFSYSELKQATKGFSEEIGRGAGGTVYKGVLEDNQVVAIKRLHEVANQGESEFLAEVSIIGRLNHMNLICMLGYCAEGKHRLLVYEYMENGSLAQNLSSGSNVLGWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDYKPKVGDFGLSKLLNRNNLNNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGRSPTTGVQITELEAESPHHERLVTWVREKRMKGSENGSSWVDQIVDPALGSNYYMNEVEILATVALECVEEEKNARPSMSRVAEKLQSHMHTIVDVFNKE 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1006g00004 825 FunFam Serine/threonine-protein kinase 604 818 - -
Vium1006g00004 825 Gene3D Phosphorylase Kinase; domain 1 502 603 - -
Vium1006g00004 825 CDD STKc_IRAK 534 812 - -
Vium1006g00004 825 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524
Vium1006g00004 825 SUPERFAMILY Protein kinase-like (PK-like) 512 811 IPR011009 -
Vium1006g00004 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Vium1006g00004 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 204 IPR036426 -
Vium1006g00004 825 ProSiteProfiles Bulb-type lectin domain profile. 24 143 IPR001480 -
Vium1006g00004 825 FunFam S-receptor-like serine/threonine-protein kinase 498 603 - -
Vium1006g00004 825 Pfam S-locus glycoprotein domain 255 319 IPR000858 GO:0048544
Vium1006g00004 825 Gene3D - 24 147 IPR036426 -
Vium1006g00004 825 Pfam D-mannose binding lectin 70 160 IPR001480 -
Vium1006g00004 825 ProSiteProfiles Protein kinase domain profile. 528 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1006g00004 825 SMART blect_4 29 149 IPR001480 -
Vium1006g00004 825 CDD B_lectin 40 149 IPR001480 -
Vium1006g00004 825 Pfam Protein kinase domain 531 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1006g00004 825 PIRSF SRK 1 822 IPR024171 GO:0004674
Vium1006g00004 825 ProSiteProfiles PAN/Apple domain profile. 339 425 IPR003609 -
Vium1006g00004 825 SMART serkin_6 528 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1006g00004 825 PANTHER OS07G0415500 PROTEIN 9 815 - -
Vium1006g00004 825 Gene3D Transferase(Phosphotransferase) domain 1 604 823 - -
Vium1006g00004 825 Coils Coil 822 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1006g00004 Vium-Chr1006 17057 19920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1006g00004 518 823 Trihelix Transcription Factor Family AT5G38560 43.366 2.95e-72 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium1006g00004 Pkinase 1.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1006g00004 - - gmx:100808940 1337.4