Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1005g00050 ATGGCTTCGTCGAGTGGAACATCTTCAGGGTCGTCTCTGCTTCAGAATTCGGGTTCAGAGGAGGACCTGCAGGCGGTGATGGATGAGAGGAAGAGGAAGAGAATGATATCGAACCGCGAATCCGCGAGGCGATCCCGAATGAGGAAGCAGAAGCACTTGGATGATCTGGCATCACTGGTGACTCAGCTGAGGAGCGAGAATCACCAGATTCTGACATCGGTGACCCTCACCACCCAGAAGTACTTGGCGGTGGAGGCGGAGAACTCGGTGCTGAGAGCACAGGTAAGCGAGTTGAGCCACAGGTTAGAGTCTCTGAACGAGATCAACCACTTCTTGAACGCCACCAATGGTGTCTTTGGGCCTCCGGGCCCATCTCCAACCTCCTTCCTTGAGCCCGAGGGTAGTAGCAACTTCTTCAACAACCCTTTCAACATGGCATATCTCAGCCAACCGATCATGGCTTCGGCAGATATGTTGCAGTACTGA 486 0.537 MASSSGTSSGSSLLQNSGSEEDLQAVMDERKRKRMISNRESARRSRMRKQKHLDDLASLVTQLRSENHQILTSVTLTTQKYLAVEAENSVLRAQVSELSHRLESLNEINHFLNATNGVFGPPGPSPTSFLEPEGSSNFFNNPFNMAYLSQPIMASADMLQY 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1005g00050 161 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Vium1005g00050 161 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Vium1005g00050 161 FunFam BZIP transcription factor 28 79 - -
Vium1005g00050 161 MobiDBLite consensus disorder prediction 1 22 - -
Vium1005g00050 161 Pfam bZIP transcription factor 30 72 IPR004827 GO:0003700|GO:0006355
Vium1005g00050 161 Coils Coil 88 108 - -
Vium1005g00050 161 MobiDBLite consensus disorder prediction 23 50 - -
Vium1005g00050 161 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Vium1005g00050 161 PANTHER BZIP TRANSCRIPTION FACTOR 44 4 159 - -
Vium1005g00050 161 Gene3D - 28 82 - -
Vium1005g00050 161 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Vium1005g00050 161 SUPERFAMILY Leucine zipper domain 30 81 IPR046347 GO:0003700|GO:0006355
Vium1005g00050 161 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1005g00050 Vium-Chr1005 291519 292785 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1005g00050 24 161 bZIP Transcription Factor Family AT4G34590 54.676 5.52e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1005g00050 bZIP_1 5.5e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1005g00050 K25786 - gmx:778171 219.164