Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1005g00039 ATGGCAACTTACTACCCATGTTCAAGTAATCAAAGGGGTGCCGTGCCTATGCTGTGTCTAAGGGAGCCTTTGCATAATTCGTATCCCGAGACACCAATTTTGCCAAGCAATATGACATTGTTGTATATGAACTCTGGTTCATATTCTGAAGCATTACCTGGAAATTCTCAGCAGCAAAGCAATTGCTTTGTGGTTCCATCACCGTCAGTGGGTGCTTCAAATTCCACAGCTGAGCAGCAAGAAATATTGGCTAATATTGGTGGATACCAAATTGGGGTTCATGATTTCAGTGCATGGAGGGAGGGTAGAAGTGAGATGTTAGTCAGACAATCTATAGATGGACATAACTTGCAGGGCCAGGGATTATCTTTAAGCCTTGGAACCCACATGCCCTCCGGAATTCAACTGCCTTCTGTCCATGATAGGAATCATTGCTCAAATCTTGATTCGTTTTTGGGTGCAAATCCATCACTTTCAGCCAACGAGATCTACCAAAATGGCTCCTCTAGACATTCTGAAACTTTTCCTCCTGTGTTACCTGAAGCTAGTCATGATTTGAACAAAGCAGATTTTTCATTTCCTGGAATTTCCAGTGTTGGAAGAACGGTTCCTACCTCCAAATATCTCAAGGCAGTGCAACAACTGCTTGATGAAGTTGTTGATATCCGACAAGCTATTAAAAGACCTGAAACGAGAAGTCACGGAACACATGAGAACTCTCCGAAGAATTCCAAGGAGGGTGGTGAGCTCCTAGAAAATGAACGGCCTTCTGCAACTGGTGTGCCAAATTCTCAAGTCTCAGCCAGCAACTCTTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGCACAAGAAGTTAGCAAAGCTTCGGTCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATATTACCAGAAGATGCAGAACGTGGTGTCATCATTTGATGTGGTAGCAGGATGTGGGGCAGCTAAACCATACACAGCCCTTGCTCTACAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATTCAATCACTGGTCAAATTCGTGCAACACAAAAGAGCCTTGGGGAGCATGATGCTTCTGAAAGTAATAAAGGAGTTGGAATGGCAAGACTAAAGTATGTGGACCATCAAGTGCGACAACAGAGGGCTCTTCAGCAGCTTGGTATGATGCAGCATGCATGGAGACCGCAAAGGGGGCTTCCAGAAAGCTCTGTTTCGATTCTCCGCGCATGGCTTTTTGAGCATTTCCTTCATCCATACCCAAAGGATTCCGAAAAGACCATGCTAGCAAGACAGACAGGCTTAACCCGAAGTCAGGTCTCAAATTGGTTCATAAATGCACGTGTGCGTCTGTGGAAGCCTATGATTGAGGATATGTACAAGCAAGATGTTTCTGATGTGGACATGGACTCAACTTCTTCATCTGAAAATGTCTCCAAGGCAACAAAAAGTGATGTCAAGATCTCCAATGATACGGTTGATGATTCACAGCACTGTCAGAGTCCAATAGTAACCGATACAAATCATGGTGGTGGACAAGCTAAGGACTTTGGATATGATCAAGTTCTTGATACAAAAATCATGGCATCCACTGGATTAGCTAGTCATGAGGTTGAAACAGAACATAGGTCAGGAAAGCAGTCTGGGGAGAAAAGGCCAAATTTGGATAATTGTGGTCTCTTCTCTGATAACATGATTGTTCAATCTGATAGAGCTACTAATGATGACAGGTTTATAGCAGTTGGTTCAACGTGCCAAATGTCAGAGTTTGAGAGCTTCAAGTCAGGAAGTGGAGTGTCTCTAACTTTGGGTTTACAGCATTGTGAAGGAGGTAATTTTTTGCCTGGTGAGACCCATCTCAATTTGGTTTCCATGAAGGAAAATGGCATCTACCGCAGTGCAGGTGCAGCTTCTACAGTTGGAGTACATACAGCAGAACTTGAGCACGTTGGTACTGGAAACCAACGACAGAGGTTCAGTTCACCTCAAATGTTACATGATTTTGTTGTGTGA 2022 0.4357 MATYYPCSSNQRGAVPMLCLREPLHNSYPETPILPSNMTLLYMNSGSYSEALPGNSQQQSNCFVVPSPSVGASNSTAEQQEILANIGGYQIGVHDFSAWREGRSEMLVRQSIDGHNLQGQGLSLSLGTHMPSGIQLPSVHDRNHCSNLDSFLGANPSLSANEIYQNGSSRHSETFPPVLPEASHDLNKADFSFPGISSVGRTVPTSKYLKAVQQLLDEVVDIRQAIKRPETRSHGTHENSPKNSKEGGELLENERPSATGVPNSQVSASNSSCELSHAEKQDLHKKLAKLRSMLDEVDSRYKQYYQKMQNVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDSITGQIRATQKSLGEHDASESNKGVGMARLKYVDHQVRQQRALQQLGMMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKTMLARQTGLTRSQVSNWFINARVRLWKPMIEDMYKQDVSDVDMDSTSSSENVSKATKSDVKISNDTVDDSQHCQSPIVTDTNHGGGQAKDFGYDQVLDTKIMASTGLASHEVETEHRSGKQSGEKRPNLDNCGLFSDNMIVQSDRATNDDRFIAVGSTCQMSEFESFKSGSGVSLTLGLQHCEGGNFLPGETHLNLVSMKENGIYRSAGAASTVGVHTAELEHVGTGNQRQRFSSPQMLHDFVV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1005g00039 673 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Vium1005g00039 673 SMART prehox3 197 348 IPR006563 -
Vium1005g00039 673 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
Vium1005g00039 673 MobiDBLite consensus disorder prediction 539 553 - -
Vium1005g00039 673 MobiDBLite consensus disorder prediction 536 560 - -
Vium1005g00039 673 SMART HOX_1 397 461 IPR001356 GO:0003677
Vium1005g00039 673 MobiDBLite consensus disorder prediction 257 276 - -
Vium1005g00039 673 MobiDBLite consensus disorder prediction 227 252 - -
Vium1005g00039 673 Pfam Associated with HOX 203 347 IPR006563 -
Vium1005g00039 673 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 125 481 - -
Vium1005g00039 673 CDD homeodomain 397 458 IPR001356 GO:0003677
Vium1005g00039 673 MobiDBLite consensus disorder prediction 470 501 - -
Vium1005g00039 673 Coils Coil 280 307 - -
Vium1005g00039 673 SUPERFAMILY Homeodomain-like 398 463 IPR009057 -
Vium1005g00039 673 MobiDBLite consensus disorder prediction 227 278 - -
Vium1005g00039 673 Gene3D - 393 470 - -
Vium1005g00039 673 MobiDBLite consensus disorder prediction 470 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1005g00039 Vium-Chr1005 248355 252318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1005g00039 27 673 Homeobox Transcription Factor Family AT4G34610 38.485 1.84e-123 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium1005g00039 POX 7.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1005g00039 - - vra:111240485 1307.74