Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1005g00037 ATGATCATTCCGGAGAAGAACCGTAAGGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGACTTCAATTTGGCGAAGCACCCTGAGATTGATGTGCCTAATTTGCAGGTGATTAAGCTGATGCAAAGCTTCAAGTCCCGCGAGTACGTGAGGGAGACCTTTGCTTGGATGCATTATTACTGGTTCCTCACCAATGATGGCATCGAGTTTCTCAGAACTTACCTTAACCTTCCTTCCGAAATTGTCCCTGCCACTTTGAAGAAACAGGCCAAGCCACCTGGCAGACCCTTTGGTGGCCCATCCGGTGATCGCCCTAGGGGTCCACCTCGCTTTGAAGGCGAGCGGAGGTTTGGTGGTGATCGTGACGGATATCGTGGAGGTCCCCGGGGACCTGGTGGAGACTTTGGAGGAGATAAAGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGGGATCTGGAGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGGGCGCCAACCAGCTCAAATATTCCTTAA 543 0.5212 MIIPEKNRKEICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGGSGGRPGFGRGSGGFGAPTSSNIP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1005g00037 180 MobiDBLite consensus disorder prediction 112 128 - -
Vium1005g00037 180 Pfam Plectin/S10 domain 3 94 IPR005326 -
Vium1005g00037 180 Gene3D - 1 104 IPR036388 -
Vium1005g00037 180 MobiDBLite consensus disorder prediction 91 180 - -
Vium1005g00037 180 FunFam 40S ribosomal protein S10 1 104 - -
Vium1005g00037 180 PANTHER 40S RIBOSOMAL PROTEIN S10 1 174 IPR037447 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1005g00037 Vium-Chr1005 227978 229864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1005g00037 1 180 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 75.556 8.65e-76 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1005g00037 K02947 K09422 gmx:100500445 230.335