Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1005g00034 ATGCAGGGGAAATGTGTCTTCTTTGTGTTTGTGAGGGAGTGTGCTGGTTGTGGTGTGATTTGGTCCAATTTTCTGCATTTTTTGAAACTAGTATCTAAATTATATTTCAGAAAGTTATATATTGTTGATGCACGGCCAAGAAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAAAATCATCATCAAACTATTTTCAATCCGAGGTAGTCTTGTTGGGGATAGACAACATCCATGCGATGAGAGATTTGTTCGGCTTCGAGAATACATGGACACTCATTTCAAAGCGTCATCAGATGGAATTTCCTCTTTCTTGTGTCCATGACAACCCAACCACAATGATTGTGGGTATTACGTGTGTTAATATATGA 375 0.392 MQGKCVFFVFVRECAGCGVIWSNFLHFLKLVSKLYFRKLYIVDARPRKNALANGAMGGGSKSSSNYFQSEVVLLGIDNIHAMRDLFGFENTWTLISKRHQMEFPLSCVHDNPTTMIVGITCVNI 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1005g00034 124 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 86 IPR029021 -
Vium1005g00034 124 PANTHER MYOTUBULARIN-RELATED 37 86 IPR030564 -
Vium1005g00034 124 Pfam Myotubularin-like phosphatase domain 37 86 IPR010569 -
Vium1005g00034 124 ProSiteProfiles Myotubularin phosphatase domain. 1 124 IPR010569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1005g00034 Vium-Chr1005 204452 206695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1005g00034 37 86 Protein tyrosine phosphatase (PTP) family AT3G10550 86.000 6.04e-24 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1005g00034 K18081 - vum:124824561 259.996