Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1005g00033 ATGCAAAGAGGAACAGAAGGAGAAGAAGAAGCAGTGTCAAGGGGTTCTAAGTGCCGAGACTGTGGGAATCAAGCCAAGAAGGAATGTTTGTATTCAAGATGCAGAACTTGTTGCAAGAACAAAGGCTTTAATTGCCAAACCCATATCAAGAGTACATGGACTCCTGTTGATAGAAGGCGCACCAAGGATAATAACCCATCTTCATCTCCACACAACTTTCACCCAGATTTTCCTCAAAACCACAACCAGATCAATCCATATTCAGGTTTAGAGATGAAATTTCCTTGTGCTACGAGTTCGATGGCTATGTTTCGGTGCGTTCAGGTTCGGTCGGTGGATGATGCGGTTAACGAAATAGCGTATCAAACATCTGTGAACATTGGGGGGCATGTATTCAGTGGAATACTATATGATCAAGGCCCAGAACAAAGCTATAACATTAACAAGGGTGAGAGTTCCACTGCTCTTGTTGATGAACACCAGAATAATAGTCTTGGTCTGCTGAAGAATTCTTCGAGTAGAGAAAGCAGTGGTGTAACTATAGCCTCTGCCGGTCACGGTGACCCTCTTTTTCCTCCACCACCGTATCCCTTTCCACTTGCTTCCTTCAGACCCGGTATGCCATATTTCACATACCCAAGATCTTGA 648 0.4414 MQRGTEGEEEAVSRGSKCRDCGNQAKKECLYSRCRTCCKNKGFNCQTHIKSTWTPVDRRRTKDNNPSSSPHNFHPDFPQNHNQINPYSGLEMKFPCATSSMAMFRCVQVRSVDDAVNEIAYQTSVNIGGHVFSGILYDQGPEQSYNINKGESSTALVDEHQNNSLGLLKNSSSRESSGVTIASAGHGDPLFPPPPYPFPLASFRPGMPYFTYPRS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1005g00033 215 MobiDBLite consensus disorder prediction 66 84 - -
Vium1005g00033 215 Pfam Domain of unknown function (DUF702) 15 142 - -
Vium1005g00033 215 NCBIfam LRP1 C-terminal domain 93 141 IPR006511 -
Vium1005g00033 215 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 9 171 IPR007818 GO:0003700|GO:0006355
Vium1005g00033 215 MobiDBLite consensus disorder prediction 56 84 - -
Vium1005g00033 215 NCBIfam putative zinc finger domain, LRP1 type 17 59 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1005g00033 Vium-Chr1005 198549 199329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1005g00033 15 162 C2H2 Transcription Factor Family AT2G21400 48.077 1.40e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vium1005g00033 DUF702 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1005g00033 - - pvu:PHAVU_009G004300g 349.747