Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1005g00032 ATGAAGATCCAGTGTGATGTATGTGACAAAATGGAAGCCACAATCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCATGGCTGCGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCTCGTTTCCCTCTCATCTTCCCCACCTCCAAAGACTTCCCTCTCTGTGATATCTGCCAAGAGAAGCGTGCGTATCTATTCTGCCAAGAAGACAGGGCATTGTTGTGCAGGGAATGTGACCTTCCAATACACAGAGCGAATGAGCATACTCAGAAACATAACAGGTTTCTTCTAACGGGGGTGAAGCTCTCGGCTACATCTTTGGATTATGCTTCCTCCTCCACCAATGAAAATCTCAGCTCTTCTTGCAAGGTTGAAGACAACGTGGGCAGTGACACTGGCTCGGTTTCAACCAGCAGCATTTCTGAGTATTTGATCGAGACAATACCCGGTTACTGTTTCGAAGAACTCCTTGATGGTTCATTCGCACCTAATAATGGTTTCTAA 513 0.4698 MKIQCDVCDKMEATIFCPADEAALCHGCDRTIHHANKLATKHPRFPLIFPTSKDFPLCDICQEKRAYLFCQEDRALLCRECDLPIHRANEHTQKHNRFLLTGVKLSATSLDYASSSTNENLSSSCKVEDNVGSDTGSVSTSSISEYLIETIPGYCFEELLDGSFAPNNGF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1005g00032 170 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vium1005g00032 170 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium1005g00032 170 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium1005g00032 170 CDD Bbox1_BBX-like 5 47 - -
Vium1005g00032 170 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 161 - -
Vium1005g00032 170 CDD Bbox1_BBX-like 57 100 - -
Vium1005g00032 170 FunFam B-box zinc finger protein 21 1 98 - -
Vium1005g00032 170 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Vium1005g00032 170 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vium1005g00032 170 Gene3D Classic Zinc Finger 1 96 - -
Vium1005g00032 170 SUPERFAMILY B-box zinc-binding domain 51 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1005g00032 Vium-Chr1005 186468 187692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1005g00032 1 170 C2C2-CO-like Transcription Factor Family AT1G75540 50.732 3.37e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vium1005g00032 zf-B_box 9.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1005g00032 - - gmx:100800981 284.263