Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1005g00030 ATGAAGATCCAGTGTGATGTATGTGACAAAATGGAAGCCACAATCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCATGGCTGCGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCTCGTTTCCCTCTCATCTTCCCCACCTCCAAAGACTTCCCTCTCTGTGATATCTGCCAAGAGAAGCGTGCGTATCTATTCTGCCAAGAAGACAGGGCATTGTTGTGCAGGGAATGTGACCTTCCAATACACAGAGCGAATGAGCATACTCAGAAACATAACAGGTTTCTTCTAACGGGGGTGAAGCTCTCGGCTACATCTTTGGATTATGCTTCCTCCTCCACCAATGAAAATCTCAGCTCTTCTTGCAAGGTTGAAGACAACGTGGGCAGTGACACTGGCTCGGTTTCAACCAGCAGCATTTCTGAGTATTTGATCGAGACAATACCCGGTTACTGTTTCGAAGAACTCCTTGATGGTTCATTCGCACCTAATAATGGTTTCTGTAAGAAGGAGAATCATGATCATCTTTGGGAGTTTCAGGAGCAAGATCTAGCTCAGGAGTTAAGGAAATTCCAAACGGGGGATGTTATGGTTGTGCCGTTTCTTAAACTAGTTGTTCGAGATTGA 636 0.4607 MKIQCDVCDKMEATIFCPADEAALCHGCDRTIHHANKLATKHPRFPLIFPTSKDFPLCDICQEKRAYLFCQEDRALLCRECDLPIHRANEHTQKHNRFLLTGVKLSATSLDYASSSTNENLSSSCKVEDNVGSDTGSVSTSSISEYLIETIPGYCFEELLDGSFAPNNGFCKKENHDHLWEFQEQDLAQELRKFQTGDVMVVPFLKLVVRD 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1005g00030 211 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vium1005g00030 211 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium1005g00030 211 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Vium1005g00030 211 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium1005g00030 211 CDD Bbox1_BBX-like 5 47 - -
Vium1005g00030 211 FunFam B-box zinc finger protein 21 1 98 - -
Vium1005g00030 211 CDD Bbox1_BBX-like 57 100 - -
Vium1005g00030 211 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vium1005g00030 211 SUPERFAMILY B-box zinc-binding domain 51 91 - -
Vium1005g00030 211 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 - -
Vium1005g00030 211 Gene3D Classic Zinc Finger 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1005g00030 Vium-Chr1005 186362 187697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1005g00030 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 48.858 2.75e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vium1005g00030 zf-B_box 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1005g00030 - - gmx:100800981 297.745