Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1005g00027 ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGCGGGAGTTCATCGTCCAGCAAACGCACTGCGAGGATTTTTTTTCCCTCAACGCCAACACCGTTGCCGGAGGCGACGATTTCTCCGTCGACGACCTATTTGACTTTTCAGACGGCTCTCTTCACTACGAACCACAAGAATACGTGGAAGAAAAAAAAAGTTTATCGGCCTCGTCGCAGTCAAAGGACCGTGGAGAAGACGATAGCAACTCTAATTCCACCGGAGTTTCCTACGATTCAATTTTCTCCGCCGAACTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTTGACGATTCTCTCCCGGAGCTGTCTCTTTTATACCCGGTTCGTCCGGAGGAAGTGAACCGGCGGGTCGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCGTGTGAAACGAAGATAACAACCAAGACAAGAACTGTACGGAATAGAAAACCAAACGCTCGCGTGTGGTCGTTGGGCCCGTTGCTCTCTCTCCCGTCCTCGCCGTCTTCGTGCTCGTCTTCCTCGACGGAGCCGCCCGCGAAGAAACAGAAAAAGCGGGCCGAGGCCCAGCCCGTTGGGGTCCAGGTTCAGCGGCGGTGCAGTCACTGTCAAGTGCAGAAGACACCGCAGTGGAGGACGGGCCCACTGGGCGCAAAAACCCTCTGCAACGCGTGCGGGGTCCGGTACAAATCGGGTCGGCTTTTTTCGGAGTACAGACCGGCCTGTAGCCCAACCTTCTGCAGCGATATTCACTCCAACAGCCACCGGAAAGTGTTGGAGATTCGCAAGAAGAAAGGGGTTTCTGGGCCGGAGGCCCATCCCCAGGCCCAAATGGTTCCCACCTGCTGA 900 0.5544 MEVAVAKALKPSLRREFIVQQTHCEDFFSLNANTVAGGDDFSVDDLFDFSDGSLHYEPQEYVEEKKSLSASSQSKDRGEDDSNSNSTGVSYDSIFSAELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRPEEVNRRVEPEPSAKKTPRFPCETKITTKTRTVRNRKPNARVWSLGPLLSLPSSPSSCSSSSTEPPAKKQKKRAEAQPVGVQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKGVSGPEAHPQAQMVPTC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1005g00027 299 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Vium1005g00027 299 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Vium1005g00027 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 272 - -
Vium1005g00027 299 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Vium1005g00027 299 MobiDBLite consensus disorder prediction 174 208 - -
Vium1005g00027 299 Gene3D - 210 261 IPR013088 GO:0006355|GO:0008270
Vium1005g00027 299 FunFam GATA transcription factor 207 293 - -
Vium1005g00027 299 MobiDBLite consensus disorder prediction 60 89 - -
Vium1005g00027 299 MobiDBLite consensus disorder prediction 60 82 - -
Vium1005g00027 299 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Vium1005g00027 299 PANTHER GATA TRANSCRIPTION FACTOR 29 295 - -
Vium1005g00027 299 PIRSF Txn_fac_GATA_plant 16 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vium1005g00027 299 MobiDBLite consensus disorder prediction 179 195 - -
Vium1005g00027 299 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1005g00027 Vium-Chr1005 149509 151039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1005g00027 40 282 C2C2-Gata Transcription Factor Family AT4G36240 44.094 6.64e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium1005g00027 GATA 9.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1005g00027 - - gmx:100780311 461.455