Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1005g00020 ATGAAGGATAGTTTTGTCTTTGGGAAACACACGACACAGAACCACTTCGCTTTGCATTCGCACCTTCTCCATCCCATTCTCATTCTCTTTCCGTTACCTTCTTCTATATACCCTCTCCACGCGCACACAGACCCTAAATCTCTTCATTTTCTCAATTTTATTTATTTTACTCATAAATTAAACATTCAAATTGCTGTTCCTGGAATCCCTATTCTGTTATCCATGGACGCCGAAGATGACGAAGCTTCACTCCAACCACACTCTGATGCACAATGCCACACCGACATGCAGAATATCCCCTACGCTGCCGCGGAAGTCCCCGAGCCCGATACCGTAGGGGAGCTGAGCGCAGCCGCCGCCGTCCATGAGGTCGCCGCTGTTGAACCCGATGCGACGATGGAGGCGGCGGTTGAGTCCGACGAGGGCGTCGGAGCGCAAGTGATGGACGAGGTAATTGAGGAGAAGGGGGATGAGGTCACCGATGTGGATGACGTGGCGTTGGAGATGGAGAACGTCGAAGAGGAAGGGAATTTGGCAATTGATGCGGAAGAGGACGAAATTGGGGACGAAGACGCGAACGAAGACGCTTTGATGGAAGAAGAAGATTACGAACAGCAACAAGGGGAGGAGGAGGAGGAGGGGGAGGAGGAAGAAAAACAGCAACAAGGGGAGGAGGAGGAGGAGGGGGAGGAGGAAGAAAAACAGCAACAAGGAGTGGAGGAGGAAGAAGAGGAACAGCAACAGGGTGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAACAGCAACAAGGAGAAGAAGCAGAAGAAGATGCTGATGCTGGAATGGCAAAAACAGACGATACAGAGGAGAAGAGTGTGAGTGGTGGGAAGAGGAAGCGTGGAGCTGGGAAGAATGCTAAGACTACAGGGAGAGTTGCGTCCAGGAAAAAGACGGAAGAGGATGTTTGTTTCATTTGCTTTGATGGAGGTGACCTTGTGCTTTGTGACCGCAGGGGATGTCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCATTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCAAACTATATGTGCTATACATGTACTTTTTCTCTGTGCAAGGGATGCATCAAAGATGCTGTTATTTTATGTGTCAGGGGAAACAAGGGATTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGTGCAGGGAAGCAATGTGGGACAAGTAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAACTATCTCTAACATTTGATGAAATCTCTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAGGAGGAATCACCTGATGAACTTTTTGATGCCACTAATGATAGAGGATCAGATTCTGATAGCTCCTATGAAAATGATTCCAATCGCCCTAAAAGAAGAAAGGCAAAGAAACGGGGTAAGCCCCGTTCCAAAGAAGGAAATTCGAATGGTGCAGTGACAGTGTCTGGTGCTGATGGGCCATCCGGAGATGACAGCTCTGAGTGGGCTTCAAAAGAGCTTCTGGAGTTTGTTATACACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTTGATGTGCAGGCTCTTTTGCTTGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATATGTGATGCGAGACTTCAAAATCTTTTTGGTAAACCAAGAGTGGGACATTTCGAGATGTTAAAGCTTCTTGAGTCCCATTTCCTTCTAAAAGAGGATTCTCAGGCCGAAGATCTGCAGGGAAGTGTTGTTGACACCGAAGTTAGTCATTTGGAAGCAGATGGGAATCCCAATTCATATACGAAAGCTGGCAAAGATAAGAAGCGTAAAAATCGCAAAAAGGGTGATGACAGAGGACTTCAAACTAATGTTGATGATTATGCAGCTATTGATAACCATAATATTAATTTAATTTATCTACGACGAAATTTGGTTGAAGATCTACTTGAAGATACAGAGAAGTTTCATGATAAAGTTGTTGGTGCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTATATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATACGTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCTATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAACGTCTCCGCCAAAGCATTAAGTGTGGTCTCATAAATCGGCTAACTGTGGGTGACATACAGGACAAGGCACTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTGAGTCATCTCCGCGATAGAGCCAGTGAGAAAGGACGCCGGAAAGAGCTCAGAGAATGTGTAGAGAAACTGCAGCTTTTGAAGACACCTGAAGAACGTCAACGTAGGTTGGAGGAAATTCCAGAGATACACGTGGATCCGAACATGGATCCCAGTTATGAATCTGAAGAAGACGAAGATGAAATGGACGATAAAAGACGAGAAAACTACATGAGACCTAGAGGGTCTACTTCCTTTGGAAGGAGGGGGAGAGATATTGCTTCTCCTAGAAGTGTTTCTATTTCAAATGAATCTTGGAGTGGAACAAGGAATTATTCAAATACGAATCAGGAACTTGGCAGAAATTTGTCCAATAAGGGTTTTTCAATCAAAGGTGAAAATGCTTCTAATGTTAATGAGGTACTGAATGATACTCATTTGCTCCAGGGAAGAGATAGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAACTCTCTTCAAGCTTGGAAAGTGGTGCCAAAAGTACCCAATCATTGGTAACATCTGATTCTTTCTCCACTGCTGTATTGGAAGCTTCTGCAGCACCATCTTCCGCTGGAATAACTCCTTCAACTTTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCTTCCGGAAAAATTCAGGGACCATTTTCTATGGTGCAGTTACGCAAATGGAGCAACACAGGATACTTTCCCGCTGATTTGAGGGTTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCGTGACTGATGCCTTGGCAGGGAATTTTTCTAAAGAACCATCGATGGTGGATAAGGCTCAAAAGGTGCATGATTTACATTACCCAGCCTCGTACTCTAGGAAGTCTGCTCAGGGTATGGAAGGTCAAGCTGGAGAAAGACCAACATTTGATCAAAATAGTGGATCTTTGAATTCACATAGTACTCTGGGTTCTCCGGCACAAACCACAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCAAGTAGACCCTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAACGGCTGGGGTTCTGATGCTGGTAGTAGAAATGAAACAACAAATCTTCCTTCACCTACACCTCAGACTACCCCTGGTGTGTCTAAGGGGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCGTAGGAAATTCATTCCCAAGCAATCATGGAGGTTTGCAGGCCTCTTTGGTAGTGCACCCAGAGCATGCTGTGCAAAATCCTGAAAAAGGCTCTTCACAACCCGGTATTAGTTCAGTGTCTTCAGATAATTCTAGGTTACATCCTCATCCAGCACCGGTGGCACCTGTTCTGCATTCAGGGCTTGACCTCAAAATGGCAGGTACAAATATGCAAAACCAGGTTGTGCTTAGCCACAACTCTCATGCAGAAGCTCAAGGGTGGGGTTCTGCTGGGGTTCCAAGGCCAGAACTGCAGGCTTGGGGAGGTGTATCATCCCAACCAAATTCTGCTACTATGCCTGCCCAGCCAGCATCCCATGGCCCCTGGGTTGATGCTTCATCTGTGCAGAACACTGCCTCTTTTAACACTGGAAATCCATCTGCAGGTTTACCCACACCTGGGTTTCTGGGCATGAATACACCCGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGCCAAACATCACAGGTCCTTCTCCAGCTCCACCCAATATGCCTTGGGGAATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGCGTTGTACCTGCTGCCAATATGAACGCAAACTGGATTCCTACGCAGGGGCCAGCACCAGGAAATTCAAATCCAGGATGGGCTGCCCCTAGTCAGGGTCTACCTCAAGTGAATGCAGTTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGTGAATGCAGGATGGGTTGGGCCTGGTCAGGGTGTACCACCTGGAAATGCCAACCCTGTTTGGGTTCCACCGGCAGGGAATCCAGGCGTGTGGGGAAGTGAGCAAAGTCATAATGGAGACCGGTTCCCCAACCAAGGGGATCGAGGTAGCCAAAGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAACAGGCAATCATCATTTGGCAGAGGAGCTCCTTCCAGGCCTCCTTTTGGGGGACAACGAGGAGTTTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGGGATTCTTGTGATTTTCTACACAATTAG 4698 0.4583 MKDSFVFGKHTTQNHFALHSHLLHPILILFPLPSSIYPLHAHTDPKSLHFLNFIYFTHKLNIQIAVPGIPILLSMDAEDDEASLQPHSDAQCHTDMQNIPYAAAEVPEPDTVGELSAAAAVHEVAAVEPDATMEAAVESDEGVGAQVMDEVIEEKGDEVTDVDDVALEMENVEEEGNLAIDAEEDEIGDEDANEDALMEEEDYEQQQGEEEEEGEEEEKQQQGEEEEEGEEEEKQQQGVEEEEEEQQQGEEEEEEEEEEEQQQGEEAEEDADAGMAKTDDTEEKSVSGGKRKRGAGKNAKTTGRVASRKKTEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNANYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNVQGSNVGQVDFDDKNSWEYLFKDYYIDLKEKLSLTFDEISQAKNPWKGSDMLHSKEESPDELFDATNDRGSDSDSSYENDSNRPKRRKAKKRGKPRSKEGNSNGAVTVSGADGPSGDDSSEWASKELLEFVIHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEVSHLEADGNPNSYTKAGKDKKRKNRKKGDDRGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGAFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRRENYMRPRGSTSFGRRGRDIASPRSVSISNESWSGTRNYSNTNQELGRNLSNKGFSIKGENASNVNEVLNDTHLLQGRDRESQLSNSWERQKLSSSLESGAKSTQSLVTSDSFSTAVLEASAAPSSAGITPSTLKINETEKMWHYQDPSGKIQGPFSMVQLRKWSNTGYFPADLRVWRTTEKQDDSILVTDALAGNFSKEPSMVDKAQKVHDLHYPASYSRKSAQGMEGQAGERPTFDQNSGSLNSHSTLGSPAQTTGGSWRSKDNMNSLASRPSPLAVEVPKNPANGWGSDAGSRNETTNLPSPTPQTTPGVSKGQAFENKWSPTPVQLPGSLVGNSFPSNHGGLQASLVVHPEHAVQNPEKGSSQPGISSVSSDNSRLHPHPAPVAPVLHSGLDLKMAGTNMQNQVVLSHNSHAEAQGWGSAGVPRPELQAWGGVSSQPNSATMPAQPASHGPWVDASSVQNTASFNTGNPSAGLPTPGFLGMNTPEPWRPPASSSQPNITGPSPAPPNMPWGMGMPGNQNMNWGGVVPAANMNANWIPTQGPAPGNSNPGWAAPSQGLPQVNAVGWVGPGQGRSHVNVNAGWVGPGQGVPPGNANPVWVPPAGNPGVWGSEQSHNGDRFPNQGDRGSQSRDSGYGGKSWNNRQSSFGRGAPSRPPFGGQRGVCKYHESGHCRKGDSCDFLHN 1565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1005g00020 1565 ProSiteProfiles GYF domain profile. 1020 1074 IPR003169 GO:0005515
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 630 662 - -
Vium1005g00020 1565 FunFam Zinc finger CCCH domain-containing protein 19 522 617 - -
Vium1005g00020 1565 SUPERFAMILY GYF domain 1012 1073 IPR035445 -
Vium1005g00020 1565 PANTHER UNCHARACTERIZED 190 1564 - -
Vium1005g00020 1565 Pfam GYF domain 1023 1063 IPR003169 GO:0005515
Vium1005g00020 1565 ProSiteProfiles Plus3 domain profile. 671 804 IPR004343 GO:0003677
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 459 532 - -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 903 927 - -
Vium1005g00020 1565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 407 IPR013083 -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 1467 1541 - -
Vium1005g00020 1565 FunFam Zinc finger CCCH domain-containing protein 19 672 801 - -
Vium1005g00020 1565 ProSiteProfiles Zinc finger C3H1-type profile. 1540 1565 IPR000571 GO:0046872
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 846 927 - -
Vium1005g00020 1565 SMART swib_2 537 615 IPR019835 -
Vium1005g00020 1565 SMART gyf_5 1021 1076 IPR003169 GO:0005515
Vium1005g00020 1565 SUPERFAMILY Plus3-like 672 800 IPR036128 GO:0003677
Vium1005g00020 1565 CDD GYF 1020 1075 IPR003169 GO:0005515
Vium1005g00020 1565 CDD Bbox1 361 387 - -
Vium1005g00020 1565 Gene3D - 673 801 IPR036128 GO:0003677
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 1238 1264 - -
Vium1005g00020 1565 CDD PHD5_NSD 315 360 - -
Vium1005g00020 1565 Pfam Plus-3 domain 676 779 IPR004343 GO:0003677
Vium1005g00020 1565 Coils Coil 193 270 - -
Vium1005g00020 1565 SMART rtf1 671 781 IPR004343 GO:0003677
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 1316 1336 - -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 1114 1153 - -
Vium1005g00020 1565 FunFam Zinc finger CCCH domain-containing protein 19 305 405 - -
Vium1005g00020 1565 Gene3D - 1021 1080 IPR035445 -
Vium1005g00020 1565 SUPERFAMILY FYVE/PHD zinc finger 311 366 IPR011011 -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 1240 1259 - -
Vium1005g00020 1565 CDD SWIB-MDM2_like 535 610 - -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 1101 1200 - -
Vium1005g00020 1565 FunFam Zinc finger CCCH domain-containing protein 19 1022 1079 - -
Vium1005g00020 1565 ProSiteProfiles Zinc finger PHD-type profile. 313 379 IPR019787 -
Vium1005g00020 1565 ProSitePatterns Zinc finger PHD-type signature. 316 376 IPR019786 -
Vium1005g00020 1565 Gene3D SWIB/MDM2 domain 526 620 IPR036885 -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 1170 1200 - -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 846 865 - -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 462 497 - -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 171 305 - -
Vium1005g00020 1565 SUPERFAMILY SWIB/MDM2 domain 534 611 IPR036885 -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 171 276 - -
Vium1005g00020 1565 ProSiteProfiles SWIB/MDM2 domain profile. 529 612 IPR003121 -
Vium1005g00020 1565 Pfam SWIB/MDM2 domain 537 610 IPR003121 -
Vium1005g00020 1565 SMART PHD_3 315 361 IPR001965 -
Vium1005g00020 1565 MobiDBLite consensus disorder prediction 1491 1531 - -
Vium1005g00020 1565 SUPERFAMILY CCCH zinc finger 1543 1565 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1005g00020 Vium-Chr1005 110016 122748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1005g00020 313 386 PHD Transcription Factor Family AT4G14920 39.189 1.03e-06 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vium1005g00020 Plus-3 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1005g00020 - - gmx:121174757 2177.9