Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1005g00019 ATGAAGGATAGTTTTGTCTTTGGGAAACACACGACACAGAACCACTTCGCTTTGCATTCGCACCTTCTCCATCCCATTCTCATTCTCTTTCCGTTACCTTCTTCTATATACCCTCTCCACGCGCACACAGACCCTAAATCTCTTCATTTTCTCAATTTTATTTATTTTACTCATAAATTAAACATTCAAATTGCTGTTCCTGGAATCCCTATTCTGTTATCCATGGACGCCGAAGATGACGAAGCTTCACTCCAACCACACTCTGATGCACAATGCCACACCGACATGCAGAATATCCCCTACGCTGCCGCGGAAGTCCCCGAGCCCGATACCGTAGGGGAGCTGAGCGCAGCCGCCGCCGTCCATGAGGTCGCCGCTGTTGAACCCGATGCGACGATGGAGGCGGCGGTTGAGTCCGACGAGGGCGTCGGAGCGCAAGTGATGGACGAGGTAATTGAGGAGAAGGGGGATGAGGTCACCGATGTGGATGACGTGGCGTTGGAGATGGAGAACGTCGAAGAGGAAGGGAATTTGGCAATTGATGCGGAAGAGGACGAAATTGGGGACGAAGACGCGAACGAAGACGCTTTGATGGAAGAAGAAGATTACGAACAGCAACAAGGGGAGGAGGAGGAGGAGGGGGAGGAGGAAGAAAAACAGCAACAAGGGGAGGAGGAGGAGGAGGGGGAGGAGGAAGAAAAACAGCAACAAGGAGTGGAGGAGGAAGAAGAGGAACAGCAACAGGGTGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAACAGCAACAAGGAGAAGAAGCAGAAGAAGATGCTGATGCTGGAATGGCAAAAACAGACGATACAGAGGAGAAGAGTGTGAGTGGTGGGAAGAGGAAGCGTGGAGCTGGGAAGAATGCTAAGACTACAGGGAGAGTTGCGTCCAGGAAAAAGACGGAAGAGGATGTTTGTTTCATTTGCTTTGATGGAGGTGACCTTGTGCTTTGTGACCGCAGGGGATGTCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCATTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCAAACTATATGTGCTATACATGTACTTTTTCTCTGTGCAAGGGATGCATCAAAGATGCTGTTATTTTATGTGTCAGGGGAAACAAGGGATTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGTGCAGGGAAGCAATGTGGGACAAGTAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAACTATCTCTAACATTTGATGAAATCTCTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAGGAGGAATCACCTGATGAACTTTTTGATGCCACTAATGATAGAGGATCAGATTCTGATAGCTCCTATGAAAATGATTCCAATCGCCCTAAAAGAAGAAAGGCAAAGAAACGGGGTAAGCCCCGTTCCAAAGAAGGAAATTCGAATGGTGCAGTGACAGTGTCTGGTGCTGATGGGCCATCCGGAGATGACAGCTCTGAGTGGGCTTCAAAAGAGCTTCTGGAGTTTGTTATACACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTTGATGTGCAGGCTCTTTTGCTTGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATATGTGATGCGAGACTTCAAAATCTTTTTGGTAAACCAAGAGTGGGACATTTCGAGATGTTAAAGCTTCTTGAGTCCCATTTCCTTCTAAAAGAGGATTCTCAGGCCGAAGATCTGCAGGGAAGTGTTGTTGACACCGAAGTTAGTCATTTGGAAGCAGATGGGAATCCCAATTCATATACGAAAGCTGGCAAAGATAAGAAGCGTAAAAATCGCAAAAAGGGTGATGACAGAGGACTTCAAACTAATGTTGATGATTATGCAGCTATTGATAACCATAATATTAATTTAATTTATCTACGACGAAATTTGGTTGAAGATCTACTTGAAGATACAGAGAAGTTTCATGATAAAGTTGTTGGTGCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTATATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATACGTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCTATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAACGTCTCCGCCAAAGCATTAAGTGTGGTCTCATAAATCGGCTAACTGTGGGTGACATACAGGACAAGGCACTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTGAGTCATCTCCGCGATAGAGCCAGTGAGAAAGGACGCCGGAAAGAGCTCAGAGAATGTGTAGAGAAACTGCAGCTTTTGAAGACACCTGAAGAACGTCAACGTAGGTTGGAGGAAATTCCAGAGATACACGTGGATCCGAACATGGATCCCAGTTATGAATCTGAAGAAGACGAAGATGAAATGGACGATAAAAGACGAGAAAACTACATGAGACCTAGAGGGTCTACTTCCTTTGGAAGGAGGGGGAGAGATATTGCTTCTCCTAGAAGTGTTTCTATTTCAAATGAATCTTGGAGTGGAACAAGGAATTATTCAAATACGAATCAGGAACTTGGCAGAAATTTGTCCAATAAGGGTTTTTCAATCAAAGGTGAAAATGCTTCTAATGTTAATGAGGTACTGAATGATACTCATTTGCTCCAGGGAAGAGATAGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAACTCTCTTCAAGCTTGGAAAGTGGTGCCAAAAGTACCCAATCATTGGTAACATCTGATTCTTTCTCCACTGCTGTATTGGAAGCTTCTGCAGCACCATCTTCCGCTGGAATAACTCCTTCAACTTTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCTTCCGGAAAAATTCAGGGACCATTTTCTATGGTGCAGTTACGCAAATGGAGCAACACAGGATACTTTCCCGCTGATTTGAGGGTTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCGTGACTGATGCCTTGGCAGGGAATTTTTCTAAAGAACCATCGATGGTGGATAAGGCTCAAAAGGTGCATGATTTACATTACCCAGCCTCGTACTCTAGGAAGTCTGCTCAGGGTATGGAAGGTCAAGCTGGAGAAAGACCAACATTTGATCAAAATAGTGGATCTTTGAATTCACATAGTACTCTGGGTTCTCCGGCACAAACCACAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCAAGTAGACCCTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAACGGCTGGGGTTCTGATGCTGGTAGTAGAAATGAAACAACAAATCTTCCTTCACCTACACCTCAGACTACCCCTGGTGTGTCTAAGGGGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCGTAGGAAATTCATTCCCAAGCAATCATGGAGGTTTGCAGGCCTCTTTGGTAGTGCACCCAGAGCATGCTGTGCAAAATCCTGAAAAAGGCTCTTCACAACCCGGTATTAGTTCAGTGTCTTCAGATAATTCTAGGTTACATCCTCATCCAGCACCGGTGGCACCTGTTCTGCATTCAGGGCTTGACCTCAAAATGGCAGGTTTACCCACACCTGGGTTTCTGGGCATGAATACACCCGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGCCAAACATCACAGGTCCTTCTCCAGCTCCACCCAATATGCCTTGGGGAATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGCGTTGTACCTGCTGCCAATATGAACGCAAACTGGATTCCTACGCAGGGGCCAGCACCAGGAAATTCAAATCCAGGATGGGCTGCCCCTAGTCAGGGTCTACCTCAAGTGAATGCAGTTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGTGAATGCAGGATGGGTTGGGCCTGGTCAGGGTGTACCACCTGGAAATGCCAACCCTGTTTGGGTTCCACCGGCAGGGAATCCAGGCGTGTGGGGAAGTGAGCAAAGTCATAATGGAGACCGGTTCCCCAACCAAGGGGATCGAGGTAGCCAAAGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAACAGGCAATCATCATTTGGCAGAGGAGCTCCTTCCAGGCCTCCTTTTGGGGGACAACGAGGAGTTTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGGGATTCTTGTGATTTTCTACACAATTAG 4473 0.4552 MKDSFVFGKHTTQNHFALHSHLLHPILILFPLPSSIYPLHAHTDPKSLHFLNFIYFTHKLNIQIAVPGIPILLSMDAEDDEASLQPHSDAQCHTDMQNIPYAAAEVPEPDTVGELSAAAAVHEVAAVEPDATMEAAVESDEGVGAQVMDEVIEEKGDEVTDVDDVALEMENVEEEGNLAIDAEEDEIGDEDANEDALMEEEDYEQQQGEEEEEGEEEEKQQQGEEEEEGEEEEKQQQGVEEEEEEQQQGEEEEEEEEEEEQQQGEEAEEDADAGMAKTDDTEEKSVSGGKRKRGAGKNAKTTGRVASRKKTEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNANYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNVQGSNVGQVDFDDKNSWEYLFKDYYIDLKEKLSLTFDEISQAKNPWKGSDMLHSKEESPDELFDATNDRGSDSDSSYENDSNRPKRRKAKKRGKPRSKEGNSNGAVTVSGADGPSGDDSSEWASKELLEFVIHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEVSHLEADGNPNSYTKAGKDKKRKNRKKGDDRGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGAFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRRENYMRPRGSTSFGRRGRDIASPRSVSISNESWSGTRNYSNTNQELGRNLSNKGFSIKGENASNVNEVLNDTHLLQGRDRESQLSNSWERQKLSSSLESGAKSTQSLVTSDSFSTAVLEASAAPSSAGITPSTLKINETEKMWHYQDPSGKIQGPFSMVQLRKWSNTGYFPADLRVWRTTEKQDDSILVTDALAGNFSKEPSMVDKAQKVHDLHYPASYSRKSAQGMEGQAGERPTFDQNSGSLNSHSTLGSPAQTTGGSWRSKDNMNSLASRPSPLAVEVPKNPANGWGSDAGSRNETTNLPSPTPQTTPGVSKGQAFENKWSPTPVQLPGSLVGNSFPSNHGGLQASLVVHPEHAVQNPEKGSSQPGISSVSSDNSRLHPHPAPVAPVLHSGLDLKMAGLPTPGFLGMNTPEPWRPPASSSQPNITGPSPAPPNMPWGMGMPGNQNMNWGGVVPAANMNANWIPTQGPAPGNSNPGWAAPSQGLPQVNAVGWVGPGQGRSHVNVNAGWVGPGQGVPPGNANPVWVPPAGNPGVWGSEQSHNGDRFPNQGDRGSQSRDSGYGGKSWNNRQSSFGRGAPSRPPFGGQRGVCKYHESGHCRKGDSCDFLHN 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1005g00019 1490 ProSiteProfiles GYF domain profile. 1020 1074 IPR003169 GO:0005515
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 630 662 - -
Vium1005g00019 1490 FunFam Zinc finger CCCH domain-containing protein 19 522 617 - -
Vium1005g00019 1490 ProSiteProfiles Plus3 domain profile. 671 804 IPR004343 GO:0003677
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 459 532 - -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 903 927 - -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 1101 1202 - -
Vium1005g00019 1490 ProSiteProfiles Zinc finger C3H1-type profile. 1465 1490 IPR000571 GO:0046872
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 1416 1456 - -
Vium1005g00019 1490 Gene3D - 1021 1080 IPR035445 -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 1170 1202 - -
Vium1005g00019 1490 SUPERFAMILY GYF domain 1012 1073 IPR035445 -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 846 927 - -
Vium1005g00019 1490 SMART swib_2 537 615 IPR019835 -
Vium1005g00019 1490 SMART gyf_5 1021 1076 IPR003169 GO:0005515
Vium1005g00019 1490 CDD GYF 1020 1075 IPR003169 GO:0005515
Vium1005g00019 1490 CDD Bbox1 361 387 - -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 1238 1264 - -
Vium1005g00019 1490 CDD PHD5_NSD 315 360 - -
Vium1005g00019 1490 SUPERFAMILY SWIB/MDM2 domain 534 611 IPR036885 -
Vium1005g00019 1490 Coils Coil 193 270 - -
Vium1005g00019 1490 SMART rtf1 671 781 IPR004343 GO:0003677
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 1293 1316 - -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 1114 1153 - -
Vium1005g00019 1490 SUPERFAMILY FYVE/PHD zinc finger 311 367 IPR011011 -
Vium1005g00019 1490 FunFam Zinc finger CCCH domain-containing protein 19 1022 1079 - -
Vium1005g00019 1490 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 218 1490 - -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 1240 1259 - -
Vium1005g00019 1490 FunFam Zinc finger CCCH domain-containing protein 19 672 801 - -
Vium1005g00019 1490 CDD SWIB-MDM2_like 535 610 - -
Vium1005g00019 1490 Pfam GYF domain 1023 1063 IPR003169 GO:0005515
Vium1005g00019 1490 FunFam Zinc finger CCCH domain-containing protein 19 305 405 - -
Vium1005g00019 1490 ProSiteProfiles Zinc finger PHD-type profile. 313 379 IPR019787 -
Vium1005g00019 1490 ProSitePatterns Zinc finger PHD-type signature. 316 376 IPR019786 -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 462 497 - -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 846 865 - -
Vium1005g00019 1490 Pfam Plus-3 domain 676 779 IPR004343 GO:0003677
Vium1005g00019 1490 SUPERFAMILY Plus3-like 672 800 IPR036128 GO:0003677
Vium1005g00019 1490 Gene3D - 673 801 IPR036128 GO:0003677
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 1392 1466 - -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 171 305 - -
Vium1005g00019 1490 Gene3D SWIB/MDM2 domain 526 620 IPR036885 -
Vium1005g00019 1490 Pfam SWIB/MDM2 domain 537 610 IPR003121 -
Vium1005g00019 1490 MobiDBLite consensus disorder prediction 171 276 - -
Vium1005g00019 1490 ProSiteProfiles SWIB/MDM2 domain profile. 529 612 IPR003121 -
Vium1005g00019 1490 SMART PHD_3 315 361 IPR001965 -
Vium1005g00019 1490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 407 IPR013083 -
Vium1005g00019 1490 SUPERFAMILY CCCH zinc finger 1468 1490 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1005g00019 Vium-Chr1005 110016 122748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1005g00019 313 386 PHD Transcription Factor Family AT4G14920 39.189 9.88e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vium1005g00019 Plus-3 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1005g00019 - - gmx:121174757 1970.67