Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10046g00001 ATGTCTGGATTCCAGGGTCCCGAGTTATGCAACTTCATTTCAAAGAATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTGTGCGACCAGAAAGATTTTATTCTTGTGTTGCACAGATGTGGCTGGATACTCCCAAAGTACAAAAGGTTTATGGATAATGCCGTCTTCTTGGAGAGGTGTGGATTCTTGGGACTCATCTTGCATTGCTACTCAAACTTCACCCAAGGCTTTTCATTGCACAAGCAGTCCACTATTCAAAACCGTGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCCATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGCTGAAACTAATTAATAGTTTTGGGTTTTCCAACGATGAGGGCCTACAAATGTTCAAGAGAGCCCCGACTTTGTTCAGAACATCAGAGATGAAGTTGAAAGTTGGAATGAAATTCTTCTTGCACATAGTTATGTTGCCCAAGTCATTCTTTATTCACCAGCCTCAGATTTTAATGTACAACATGGAGGATCGTGTGCTTCCTCAATATAAAGTCTTCCAGCTGTTGAAATCAAAAAATCTCTGCAAGAAAGTCCCCAGTTATATTCATGTGTTGTGCTTGTCTGAGGAGATGTTTTTAGACAAGTATATATCACAGTTCAGGAAAAATGCAGAGGAATTATTAGTAGCATACAAGGGTCATTATCTGGAGGCCTAA 777 0.3951 MSGFQGPELCNFISKNPSILTHSLKKTLVPSVEAIRKIVCDQKDFILVLHRCGWILPKYKRFMDNAVFLERCGFLGLILHCYSNFTQGFSLHKQSTIQNRVSRAVDLGFRENSRMLVHAIHTLSCLSDKTFERKLKLINSFGFSNDEGLQMFKRAPTLFRTSEMKLKVGMKFFLHIVMLPKSFFIHQPQILMYNMEDRVLPQYKVFQLLKSKNLCKKVPSYIHVLCLSEEMFLDKYISQFRKNAEELLVAYKGHYLEA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10046g00001 258 Gene3D Transcription termination factor 3, mitochondrial 2 243 IPR038538 -
Vium10046g00001 258 Pfam mTERF 124 233 IPR003690 GO:0003690|GO:0006355
Vium10046g00001 258 SMART mt_12 10 41 IPR003690 GO:0003690|GO:0006355
Vium10046g00001 258 SMART mt_12 181 215 IPR003690 GO:0003690|GO:0006355
Vium10046g00001 258 SMART mt_12 114 144 IPR003690 GO:0003690|GO:0006355
Vium10046g00001 258 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Vium10046g00001 258 PANTHER CGI-12 PROTEIN-RELATED 3 239 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium10046g00001 mTERF 8.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10046g00001 K15031 - vvi:100268158 247.284