Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10044g00004 ATGATGATATCTGGTAGATGTGCAGCTTGCAAGAATCAAAGAAGAAGATGTCCTTCAGATTGCATTTTCTCTCCATACTTCCCTGCCAATGATCCTCAAAGATTTGCTTCTGTTCACAAAATCTATGGTGGCAGTAATGTTGGGAAAATGCTTCAGCAAATTCCACCATATTTACGTGAACAAACTGCAAATTCTTTATACTTTGAAGCACAATGTAGGATTCAAGACCCAGTTTATGGATGTGTTGGGATTATCTCAAAACTATATGAGCAAATCCACAATACAGAAATTGAACTTGCTCAAATTCAAACTCAGATTACATGTCACAAGCTTCAACTGCTGCACCCAAATAATGCAGAAACAAACTTCAACTTGTTGCCAACAGCTGAAGCTCAATCCAATTTTCAAATACCACCAGAAAGCAACAACCCTCCACACTTTCAATGGCCTAATCAAGTTCCTTGGTTTAATTAA 474 0.3755 MMISGRCAACKNQRRRCPSDCIFSPYFPANDPQRFASVHKIYGGSNVGKMLQQIPPYLREQTANSLYFEAQCRIQDPVYGCVGIISKLYEQIHNTEIELAQIQTQITCHKLQLLHPNNAETNFNLLPTAEAQSNFQIPPESNNPPHFQWPNQVPWFN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10044g00004 157 Coils Coil 85 105 - -
Vium10044g00004 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vium10044g00004 157 MobiDBLite consensus disorder prediction 137 157 - -
Vium10044g00004 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 119 - -
Vium10044g00004 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10044g00004 Vium-Chr10044 17538 19032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10044g00004 6 120 AS2 family AT3G26660 58.261 1.06e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium10044g00004 LOB 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10044g00004 - - ccaj:109810657 235.728