Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10036g00002 ATGGCCGGCATAGACTTGGGTTCAGCATCGCATTTTGTTCATCATCGCCTTCAACGCCCTGACCTTGAAGACGATGACAACCAACACGACCAAGACAACGACAACGTTAACAATCACGAAGGACTTGAGCTAGTTACCACAAATCAAGGTCCCGGTGATATTGTCGCTCGCAGGCCAAGAGGGAGACCTCCCGGTTCAAAGAACAAGCCTAAGCCACCAGTTATCATCACAAGAGAGAGTGCAAACACGCTTAGGGCTCACATCCTTGAAGTCAGCAGTGGCTGTGATGTCTTTGACTCCGTCGCTACCTACGCAAGGAAGCGCCAAAGAGGGATCTGTGTCCTCAGTGGGAGTGGCACCGTCACCAATGTCACGCTCCGGCAGCCGGCCGCAGCCGGCGCCGTTGTCACGCTTCACGGAAGGTTTGAGATCCTGTCTTTGTCGGGATCATTCCTTCCACCTCCTGCTCCACCCGGTGCCACCAGTTTGACTGTGTTTCTTGGTGGAGGACAGGGCCAGGTTGTGGGTGGAAACGTTGTCGGTCCCTTGGTGGCTTCTGGGCCTGTTATTGTTATTGCTTCATCTTTTACTAATGTAGCATACGAGAGGTTGCCTTTGGATGAAGAAGAATCTATGCAGATGCAACAGGGACAATCATCTGGTGGTGGTGGCGGTGGTGGTGGTAGCGGCGGTGGAGTCAGTAATAACTCTTTTCCTGACCCTTCTTCAGGGCTTCCATTCTTCAATTTGCCCTTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGGAATTCTGGTGGAAGGCAATCTTACTGA 819 0.5214 MAGIDLGSASHFVHHRLQRPDLEDDDNQHDQDNDNVNNHEGLELVTTNQGPGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEEESMQMQQGQSSGGGGGGGGSGGGVSNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10036g00002 272 PIRSF ESCAROLA 3 268 IPR014476 GO:0003680
Vium10036g00002 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 81 214 - -
Vium10036g00002 272 MobiDBLite consensus disorder prediction 21 74 - -
Vium10036g00002 272 Gene3D - 84 218 - -
Vium10036g00002 272 MobiDBLite consensus disorder prediction 21 37 - -
Vium10036g00002 272 ProSiteProfiles PPC domain profile profile. 81 218 IPR005175 -
Vium10036g00002 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 227 IPR014476 GO:0003680
Vium10036g00002 272 FunFam AT-hook motif nuclear-localized protein 84 211 - -
Vium10036g00002 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 198 IPR005175 -
Vium10036g00002 272 CDD DUF296 85 160 IPR005175 -
Vium10036g00002 272 MobiDBLite consensus disorder prediction 209 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10036g00002 Vium-Chr10036 7333 8749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10036g00002 1 269 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.487 3.47e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10036g00002 - - vra:106758954 459.914