Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10031g00002 ATGCAGTATTACCAGATACTTCATTCACCACCCTCTTTCATGGATTCCCTCAAGGCACTTGAGGCTGATATCCAGCATGCCAATGTGCTAGCAGCTTCCATTACCAGGGGGAATGGCGAGGATTACCTTCAAATGAAGTTAGTATACAGTAAACTGGCACCGATTTTTCTGTTTTTCTTTCAATGGATGGATTATTCATGCTCCTGTCTACCTTCCAGCCATTTTAATCTTTTCCGTGTGCTTGTGTATAAGGTGCACACTAAAGGAAAGTCAGATATGTATTCAAGTGGAAGGAAAGCAACCGTAAGGGAGTTCTACAGTGTTATATTACCTTCACTCCAACGACTTCATGGTGATCTGGTAGAAGCTAACATTGGTGAAGAAAATGACAACACTGAGATGATAACCAGTAAGGACGACAAGAGGATGGCTTCAGATTATGAGTTGGAGAGAGACAATGAGTGTGGCATTTGCTTAGAATCTACCACCAAAATGGTTTTGCCTGATTGCTGCCATGCTATGTGTATAAATTGTTACAATGACTGGAACACAAGGTCAGAATCTTGTCCATTTTGCCGGGGAAGCTTAAAGAGAGTTAATTCGGGGGATTTGTGGGTTCTAACATGTAGTAGAGATGTGATTGATATGCAAACCATAAACAGAGAAGATGCCTTGCGTCTTTATCTCTTTGTGAATAATCTTCCCCAATACACTCCTGATGCTGTTTTCCTTATGTACTACGAGTACTTATTTTAG 756 0.4087 MQYYQILHSPPSFMDSLKALEADIQHANVLAASITRGNGEDYLQMKLVYSKLAPIFLFFFQWMDYSCSCLPSSHFNLFRVLVYKVHTKGKSDMYSSGRKATVREFYSVILPSLQRLHGDLVEANIGEENDNTEMITSKDDKRMASDYELERDNECGICLESTTKMVLPDCCHAMCINCYNDWNTRSESCPFCRGSLKRVNSGDLWVLTCSRDVIDMQTINREDALRLYLFVNNLPQYTPDAVFLMYYEYLF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10031g00002 251 FunFam RING/U-box superfamily protein 136 202 - -
Vium10031g00002 251 SUPERFAMILY RING/U-box 145 198 - -
Vium10031g00002 251 Pfam Ring finger domain 153 193 IPR001841 -
Vium10031g00002 251 PANTHER RING FINGER PROTEIN 41, 151 12 249 - -
Vium10031g00002 251 SMART ring_2 155 192 IPR001841 -
Vium10031g00002 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 202 IPR013083 -
Vium10031g00002 251 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
Vium10031g00002 251 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10031g00002 Vium-Chr10031 4859 6141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10031g00002 154 231 C3H Transcription Factor Family AT2G20030 34.118 9.24e-06 44.3