Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1002g00003 ATGATGTTGTTGGTCTCAACACTCGGTTCTCTTGCTCTTGGACATTTTGGTAGTAGCCTTCTGACATATTTAGTGAAGCCGGTTTTCTTGCATGGCTTCTCTGCTTTCCTTCATCTACTGTTATTGGTGGTGCTTTTAGTGTCACTGATGTGGAGGAAAGTCGCAGTTGGAACCAGAGAAAGTTCCACAAAGAACATTACGTTTGCAAAGGCTCCACTTTGTTCCTTTCTTGTTTCGGCTATCAATTTTCTACTATTCTTGGTTGATTACTTTTGTTGGTATAAAAATGGTTGGTCAGAAGAAAAGCTTGCGACCCTTTTGGATTTTCTGCTCAAAACAGTTGCTTGGGGTGTTGGTGGCGTTTGCTTGCACATGGAACTCTTCATTTCAAGGGAAAGAAGATTACCGTTCTTCTTCAGAGCTTGGTGCGTCCTTTATCTCGTTGTTTCCGGCTATTTCTTTATAATGAACTTTTCTCTCTATAAAGAAAAGCATTCTGCTTTGCCCCTTCAGAGCTTAGTTTCTGATGCTTTCTCTGTTTGTGTGTGTTTATTCTTCTTTTACTTGGAGTTGTTTGTAAAAAGTCAGGGTGGTGTAGAAGATAGTACTTTACAAGAATCTCTTTTGGATGCTGACTCAAGAGATGATGTGTTTGAGGCAAAAGAGACCAAGGGGAGTGACACTGTTACACCTTACTCTAATGCTGGAATATTTGGCCTTCTTACCTTCTCTTGGATTGGTCCTCTGATTACTGTTGGAAGGAAGAAGCCTTTGGACCTTGAGGATGTTCCCCAACTTGACAAAAGAGACAGTTTAATTGGAGCTTTTCCAACTTTTAGGGATAGGCTTGAGGCACAATGTGGAGCTATTACCACAGTGGACACACTTATGTTAGTGAAGTCATTAGTATTCTCAAGCTGGAAAGAAATTATTTTCACAGCCATCCTTGCATTGCTAAACACATTGGCTTCTTTTGTTGGTCCCTATCTTATTGATGGTTTTGTTCAATTCCTTAACGGACAACGAAAACTTGAGCATGAGGGCCTTATATTGGTGACTGCATTTTTTGTGGCAAAGCTTTTGGAGTGCCTCACAAGGAGGCACTGGTTATTTAGGTTGCAGCAGGTTGGAATACGAATGCGAGCACTTCTTGTGACAATGATATATAATAAAATTTTGAATCTTTCATGTCAATCCAAGCACGGCCACACTACTGGGGAAATAATCAACTTCATGACCGTTGATGCAGAAAAAGTTGGTGAGTTCAGTTGGCATCTACATGATCTGTGGTTAGTAGTTCTACAGGTTATAGTAGCCTTGTTGATTTTGTATAGAAATCTTGGGCTTGCTTCAATTTCTGGCCTTGTTGCAATTCTCATAGTAATGTGGGCAAACATTCCCTTGGGTTCAATCCAAGAGAAGTTTCATAACAAGTTGATGGAGTCAAAAGATGCACGAATGAAAACAACTTCTGAGATTTTGAGAAACATGCGGATTCTCAAACTACAAGGATGGGAAATGAAGTTTTTGTCAAACATAACCCAACTCAGAAAGATCGAGCAGGACTGGTTAAAAAAAGTTATATACTCGTTAGTCATGATCATATTTGTGTTTTGGTGTGCCCCAGCATTTGTGTCAGTTGTTACTTTTGGTACTTCTATACTTGTAGGAATCCCCCTTGAATCAGGGAAGATACTGTCTACACTTGCCACATTCCAGATTCTCCAAGAACCCATTTATAATCTTCCAGAGACAATATCAATGATGGCACAGACTAAGGTTTCTCTTGACAGGATTGCATCTTTCCTTCGTCTGGATGAGATTCTATTTGATGTTGTGGAGAAGCTTCCACAAGGTAGTTCTAATGTAGCAATTGAAGTAGTTGATGGGAATTTCTCTTGGGACTCTTTTACATTGCAAAACATAAATCTCAGAGTTTTTCATGGCATGAGGGTTGCTATTTGCGGTAGTGTTGGATCAGGCAAGTCTACTTTTCTTTCTTGTATATTAGGAGAAGTACCCAAGAAATCAGGGATTTTGAAGGTGTGTGGAACAAAGGCCTATGTAGCTCAGTCACCGTGGATACAAAGTAGCACGATAGAGGATAATATATTGTTTGGTAAGGACATGGAAAGGCAAAGGTATGAGAAGGTTCTTGAAGCTTGTTGCCTAAAGAAGGATCTAGATGTTTTGTCATTTGGAGATCAGACTATAATAGGAGAGAGGGGGATAAATTTGAGTGGTGGACAGAAACAGAGAATACAAATTGCTCGTGCTCTGTATCATGATGCTGATATATATCTATTGGATGATGTGTTTAGTGCTGTGGATGCTCACACAGGATCTCATCTTTTTCAGGAATGCTTACTCAACCATTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTAGAGTTCTTACGTGACGCTGACCTTATTTTGGTCATGAAAGATGGAAAGATTATTCAAAGTGGAAAATACGATTATCTGCTCAAATCAGGCATTGATTTTATGGAACTTGTTGGTGCTCATAAAGAAGCTTTGTCTGCACTTGATTCAATAGATGGAGGAAAAGCGTCTGCTATTACAAGTACATCAAAAGAGGATGTAAGATTCGTTCTTTCTCAAGGCATTGAAGAAAAGGAAGTAAGGAAAAATGAGAAAAATGGTGGAAAAGATAACAAACATGATCCAAAAGGCCAACTTATCCAAGAAGAAGAAAGAGAGAAAGGTAAAGTAGGGTTTGCAGTTTATTGGAAATATGTAACAACAACATATGGGGGAGCACTTGTACCACTCATATTGTGTGCTGAAATTTTGTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCTATCTCATCTGATGCTGAGCCAACTGTTGGAGAAAGTGCCCTTATATTTGTATATGTAGCTTTGGCCATAGGAAGTTCTATCTGTGTCCTTGCTAGAGCAACACTTGTTGCCACAACTGGTTATAAGACAGCTACTTCACTCTTCAACAACATGCATCTCTGCATTTTCCGTGCTCCAATGTCATTTTTCGATGCCACTCCAAGTGGGAGAATCCTTAATAGGGCTTCTACTGATCAAAGTGCAGTGGATATAGACATTCCTTTTCAAACTGGATCGTTAGCTTCCTCTATAGTCCATCTTCTCGGAATTGTAGCAGTAATGTCTCAAGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTATCACAGCAATCAACATTTGGTATCAGCAATATTATATACCATCAGCCCGGGAACTATCACGTTTAGTTGGGGTATGCAACGCTCCTGTCATTCAGCACTTTTCTGAAACAATATCAGGTGCATCAACCATCAGGAGCTTTGATCAGGTGCCAAGATTTCAGCAAACAAATATGAAACTGATGGATGGATATTCTCGCCCCAAGTTCAACAATGCTGCTGCTATGGAATGGTTGTGCTTCCGATTAGATATCTTGTCTTCCATCACATTTGCCTTTTGCTTGATATTCTTGATATCTATTCCACATGGATTCATAGATTCAGGTATTGCTGGTTTAGCTGTAACCTATGGCCTTAATCTGAACATTACACAATCATGGATGATATGGGAACTTTGTAGCATGGAGAACAAAATTATATCAGTGGAAAGAATTCTTCAGTATACTTCAATTCCTAGTGAGCCTCCTCTTGTTGTAGAGGAAAACCGGCCACATGATTCTTGGCCATCGTGTGGCAGGATTGATATTCACAACCTGCAGGTACGTTACGCTCCACATATGCCATTTGTGTTTCATGGCTTTACATGCACGTTCCATGGAGGACTTAAAACTGGAATTGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAACACTATTCCGAATTGTTGAGCCTACTGTTGGGAGAATTATGATTGATGGCATCAACATCTCATCCATTGGACTTCATGATTTGAGGTCTAGACTGAGCATTATCCCTCAGGATCCGACCATGTTTGAAGGTACTGTGAGAAGTAATATGGACCCACTTGAAGAGTACACAGATGAACAAATTTGGGAGGCCCTTGATAAGTGCCAACTTGGAGATGAAGTCAGAAGGAAAGAAGGAAAACTGGACTATGCAGTCTGTGAGGATGGAGAAAATTGGAGTATGGGTCAGAGGCAATTGGTATGTCTTGGTAGAGTACTGCTTAAGAAGAGTAAGGTCTTGGTGCTAGATGAAGCTACTGCATCAGTTGACACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAATACTTTTCTGATTGCACAGTCATTACAATTGCCCATAGAATAACTTCTGTCATTGATAGTGATATGATTCTACTACTTAATCAAGGACTTATTGAGGAGTATGATTCCCCAGCAAGGTTGCTAGAGGACAACTTTTCTTCTTTTGCTCAACTTGTGGCAGAGTACACCACAAGGTCCAATTCCAGTTTTGACCAACTAAAATAA 4500 0.3989 MMLLVSTLGSLALGHFGSSLLTYLVKPVFLHGFSAFLHLLLLVVLLVSLMWRKVAVGTRESSTKNITFAKAPLCSFLVSAINFLLFLVDYFCWYKNGWSEEKLATLLDFLLKTVAWGVGGVCLHMELFISRERRLPFFFRAWCVLYLVVSGYFFIMNFSLYKEKHSALPLQSLVSDAFSVCVCLFFFYLELFVKSQGGVEDSTLQESLLDADSRDDVFEAKETKGSDTVTPYSNAGIFGLLTFSWIGPLITVGRKKPLDLEDVPQLDKRDSLIGAFPTFRDRLEAQCGAITTVDTLMLVKSLVFSSWKEIIFTAILALLNTLASFVGPYLIDGFVQFLNGQRKLEHEGLILVTAFFVAKLLECLTRRHWLFRLQQVGIRMRALLVTMIYNKILNLSCQSKHGHTTGEIINFMTVDAEKVGEFSWHLHDLWLVVLQVIVALLILYRNLGLASISGLVAILIVMWANIPLGSIQEKFHNKLMESKDARMKTTSEILRNMRILKLQGWEMKFLSNITQLRKIEQDWLKKVIYSLVMIIFVFWCAPAFVSVVTFGTSILVGIPLESGKILSTLATFQILQEPIYNLPETISMMAQTKVSLDRIASFLRLDEILFDVVEKLPQGSSNVAIEVVDGNFSWDSFTLQNINLRVFHGMRVAICGSVGSGKSTFLSCILGEVPKKSGILKVCGTKAYVAQSPWIQSSTIEDNILFGKDMERQRYEKVLEACCLKKDLDVLSFGDQTIIGERGINLSGGQKQRIQIARALYHDADIYLLDDVFSAVDAHTGSHLFQECLLNHLSSKTVVYVTHQVEFLRDADLILVMKDGKIIQSGKYDYLLKSGIDFMELVGAHKEALSALDSIDGGKASAITSTSKEDVRFVLSQGIEEKEVRKNEKNGGKDNKHDPKGQLIQEEEREKGKVGFAVYWKYVTTTYGGALVPLILCAEILFQVLQIGSNYWMAWATPISSDAEPTVGESALIFVYVALAIGSSICVLARATLVATTGYKTATSLFNNMHLCIFRAPMSFFDATPSGRILNRASTDQSAVDIDIPFQTGSLASSIVHLLGIVAVMSQVAWQVFIVFIPITAINIWYQQYYIPSARELSRLVGVCNAPVIQHFSETISGASTIRSFDQVPRFQQTNMKLMDGYSRPKFNNAAAMEWLCFRLDILSSITFAFCLIFLISIPHGFIDSGIAGLAVTYGLNLNITQSWMIWELCSMENKIISVERILQYTSIPSEPPLVVEENRPHDSWPSCGRIDIHNLQVRYAPHMPFVFHGFTCTFHGGLKTGIVGRTGSGKSTLIQTLFRIVEPTVGRIMIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNMDPLEEYTDEQIWEALDKCQLGDEVRRKEGKLDYAVCEDGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQYFSDCTVITIAHRITSVIDSDMILLLNQGLIEEYDSPARLLEDNFSSFAQLVAEYTTRSNSSFDQLK 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1002g00003 1499 MobiDBLite consensus disorder prediction 884 904 - -
Vium1002g00003 1499 SUPERFAMILY ABC transporter transmembrane region 932 1233 IPR036640 GO:0005524|GO:0016020
Vium1002g00003 1499 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1002g00003 1499 CDD ABCC_MRP_domain2 1249 1469 - -
Vium1002g00003 1499 CDD ABCC_MRP_domain1 625 821 - -
Vium1002g00003 1499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1253 1485 IPR003439 GO:0005524
Vium1002g00003 1499 Gene3D - 611 855 IPR027417 -
Vium1002g00003 1499 FunFam ABC transporter C family member 5 895 1232 - -
Vium1002g00003 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 842 IPR027417 -
Vium1002g00003 1499 Gene3D - 1234 1487 IPR027417 -
Vium1002g00003 1499 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1486 - -
Vium1002g00003 1499 Gene3D ABC transporter type 1, transmembrane domain 291 607 IPR036640 GO:0005524|GO:0016020
Vium1002g00003 1499 Gene3D ABC transporter type 1, transmembrane domain 894 1232 IPR036640 GO:0005524|GO:0016020
Vium1002g00003 1499 FunFam ABC transporter C family member 5 610 853 - -
Vium1002g00003 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1242 1476 IPR027417 -
Vium1002g00003 1499 FunFam ABC transporter C family member 10 294 607 - -
Vium1002g00003 1499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 603 844 IPR003439 GO:0005524
Vium1002g00003 1499 Pfam ABC transporter 639 772 IPR003439 GO:0005524
Vium1002g00003 1499 FunFam ABC transporter C family member 3 1234 1486 - -
Vium1002g00003 1499 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Vium1002g00003 1499 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 934 1214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1002g00003 1499 Pfam ABC transporter 1271 1416 IPR003439 GO:0005524
Vium1002g00003 1499 SUPERFAMILY ABC transporter transmembrane region 299 599 IPR036640 GO:0005524|GO:0016020
Vium1002g00003 1499 SMART AAA_5 1277 1462 IPR003593 GO:0016887
Vium1002g00003 1499 SMART AAA_5 648 829 IPR003593 GO:0016887
Vium1002g00003 1499 CDD ABC_6TM_ABCC_D2 932 1226 IPR044726 GO:0140359
Vium1002g00003 1499 Pfam ABC transporter transmembrane region 935 1176 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1002g00003 1499 Pfam ABC transporter transmembrane region 311 578 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium1002g00003 1499 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1002g00003 Vium-Chr1002 39791 45579 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1002g00003 625 871 Calmodulin-binding Proteins AT2G36910 31.734 8.33e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1002g00003 - K05666 gmx:100776443 2451.78