Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10024g00002 ATGCCACAGAACTGCATAGCACCAAAGCCAGAATATTGTAATAGTCTTCACTCTGTGGAAGGACCTCCAGAGATGACTGAGTCCCATAACTCAACTGTCCTTTCTCATTCCATGCAAACCAATGAACAACAACAACAACCTTTTCCAAAACTCATTATGTACCCAATAACTCTGAAGTTTGAGGAACTGGTGTACAAAGTTAAACTAGAGCAGAAAGGAGGATGCTGGGGCAGTACATGGACTTGCAAGGAGAAGACCATACTGAATGGAATTACTGGTGTGGTGTGTCCAGGAGAAATACTAGCTATGCTGGGGCCATCAGGCAGTGGCAAAACCACACTTCTCACAGCACTTGGAGGCCGGCTCAGCGGCAAACTATCTGGTAAGATCACGTACAACGGGCAACCTTTTTCTGGTGCCATGAAGAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGCTATATCCTCACCTAACTGTCACTGAAACTCTAGTGTTCACTGCACTTCTGAGGCTTCCCAACAGCTTGAGCAGAGATGAAAAGGTTCAACATGTAGAGAGAGTGATCACTGAACTAGGCCTGACTCGTTGCAGGAGCAGCATGATAGGTGGCCCACTTTTTAGAGGAATTTCAGGAGGAGAAAAAAAGAGAGTGAGCATAGGCCAAGAAATGCTCATCAACCCAAGCCTCCTGTTGCTGGATGAGCCTACTTCAGGCTTGGATTCAACCACAGCACAAAGAATCCTCAACACAATCAAGCGCCTAGCTAGTGGGGGTAGAACTGTTGTCACCACTATTCACCAACCCTCTAGTAGGCTCTACTATATGTTTGATAAGGTGGTCTTGCTCTCGGAAGGCTGCCCCATCTATTATGGTCCTGCTTCAACTGCCTTAGACTACTTCTCTTCTGTTGGCTTTTCCACATGTGTGACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAACGGGATTGCCCCAGACTCCAAGCAAGCAACTGAACAAAGTGAGGGACTGGAACAAGAGAGGAAACAGGTGAGAGAATCCCTCATCTCTGCTTATGAGAAGAATATATCTCCGAGGCTGAAAGCTGAGATTTGCAGCATGGAAGTGAACAACCAAAATATCACAAAAGATGCTTGTGCAAGAAATTCGATAAAGCCAGAACAATGGAGCACAAGCTGGTGGCATCAGTTCAAAGTACTATTACAAAGTGGAGTGAAGGAGCGAAGGTATGAAGCCTTCAACAGGCTGAGAATATTCCAAGTTGTAAGTGTCGCTTTTCTTGGTGGACTACTGTGGTGGCATACTCCGGAGTCACACATTGAAGATCGGGTTGCCTTGCTCTTTTTCTTTTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCTGTTTTCACATTCCCTCAAGAGAGGAGAATGCTGATCAAGGAACGTTCATCAGGAATGTATCGCCTTTCTTCCTACTTTCTTGCCAGAACAATAGGAGACTTGCCACTGGAGCTTGCACTTCCAACTGCATTTGTTTTCATAATCTATTGGATGGGAGGGCTTAAACCTGATCCTGTGACTTTTATCCTTTCTCTTCTTGTGGTTCTTTACAGTGTTGTTGTCTCTCAAAGCCTTGGTTTAGCATTTGGTGCTATTTTGATGGAGATTAAACAGGCAACTACTCTAGCTTCTGTGACAACCCTTGTGTTTCTCATTGCTGGAGGGTACTATATACAACAGATTCCTCCATTCATTGTGTGGCTCAAGTATTTGAGCTATAGCTACTACTGTTACAAGCTGCTTTTAGGTGTCCAGTACAATGAAAATGACTACTATGAATGTTCAAAGGGGGAGCTGTGCAAAGTGGCAGATTTTCCTCCTATCAAATCAATGGGCTTGAATCATTTGTGGGTTGATGTGTGCATTATGGCCCTGATGTTGGTGGGTTATCGACTAGTTGCTTATTTTGCACTGCATAGAGTTAGGTAG 1980 0.4465 MPQNCIAPKPEYCNSLHSVEGPPEMTESHNSTVLSHSMQTNEQQQQPFPKLIMYPITLKFEELVYKVKLEQKGGCWGSTWTCKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGQPFSGAMKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNSLSRDEKVQHVERVITELGLTRCRSSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKRLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALDYFSSVGFSTCVTVNPADLLLDLANGIAPDSKQATEQSEGLEQERKQVRESLISAYEKNISPRLKAEICSMEVNNQNITKDACARNSIKPEQWSTSWWHQFKVLLQSGVKERRYEAFNRLRIFQVVSVAFLGGLLWWHTPESHIEDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPDPVTFILSLLVVLYSVVVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYNENDYYECSKGELCKVADFPPIKSMGLNHLWVDVCIMALMLVGYRLVAYFALHRVR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10024g00002 659 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 32 651 - -
Vium10024g00002 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 302 IPR027417 -
Vium10024g00002 659 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 310 IPR003439 GO:0005524
Vium10024g00002 659 FunFam ABC transporter G family member 22 75 304 - -
Vium10024g00002 659 Gene3D - 77 304 IPR027417 -
Vium10024g00002 659 CDD ABCG_EPDR 55 292 - -
Vium10024g00002 659 ProSitePatterns ABC transporters family signature. 210 224 IPR017871 GO:0005524|GO:0016887
Vium10024g00002 659 SMART AAA_5 97 287 IPR003593 GO:0016887
Vium10024g00002 659 Coils Coil 329 349 - -
Vium10024g00002 659 Pfam ABC-2 type transporter 267 365 IPR043926 GO:0140359
Vium10024g00002 659 Pfam ABC-2 type transporter 398 603 IPR013525 GO:0016020|GO:0140359
Vium10024g00002 659 Pfam ABC transporter 89 238 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10024g00002 Vium-Chr10024 5282 8393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10024g00002 87 286 Calmodulin-binding Proteins AT2G36910 30.332 2.13e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10024g00002 K05681 - gmx:100780191 1254.58