Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10023g00001 ATGGCCGCCGCCGAACACGGAATAAGCCTCGAACCTGAGAGAAAGAGCCTTCTCAGCCAACACACCGAGAAGCACTTCACCGCCGGCGAAATAGTCCGCGACATCATCATCGGCGTTTCCGACGGCCTCACCGTCCCCTTCGCCCTCGCCGCCGGCCTCTCCGGCGCCAATGCCACCTCCTCCATCGTTCTCACCGCTGGCATAGCCGAAGTCGCCGCCGGCGCCATCTCCATGGGGCTCGGCGGTTATTTGGCAGCAAAAAGTGAAACCGATAATTACCGGAGGGAATTGAAAAGAGAGCAAGAAGAAATCATCACGATGCCGGAAACTGAAGCGGCAGAGGTGGCAGAAATTCTAGCTCAGTATGGGATCGAGGCACACGAATATGCACCTGTGGTGAATGCTCTCAGAAAAAAACCTCAGGCATGGCTTGATTTCATGATGAGATTTGAGCTGGGACTAGAGAAACCAGATCCAAAGAGAGCATTGTATAGTGCAATGACAATTGCCATCGCTTACATATTGGGAGGAGTTGTCCCACTCCTTCCTTACATGTTCATTGCAAGGGCATCAGAAGCGGTTGTGTTCTCAGTTATAGTAACCTTGGTTGCATTGCTGGTTTTTGGTTATGCCAAGGGTTACTTTACGGGCAATAAACCATTCAGGAGTGCTTTGGAAACAGCTCTAATAGGTGCCATCGCCTCTGCAGCTGCTTTTGGTATGGCAAAGGCTTTCAATCCATAG 744 0.5148 MAAAEHGISLEPERKSLLSQHTEKHFTAGEIVRDIIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSETDNYRRELKREQEEIITMPETEAAEVAEILAQYGIEAHEYAPVVNALRKKPQAWLDFMMRFELGLEKPDPKRALYSAMTIAIAYILGGVVPLLPYMFIARASEAVVFSVIVTLVALLVFGYAKGYFTGNKPFRSALETALIGAIASAAAFGMAKAFNP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10023g00001 247 Coils Coil 83 103 - -
Vium10023g00001 247 Pfam VIT family 32 242 IPR008217 GO:0005384|GO:0030026
Vium10023g00001 247 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 18 245 IPR008217 GO:0005384|GO:0030026
Vium10023g00001 247 CDD CCC1 11 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10023g00001 Vium-Chr10023 2434 6362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10023g00001 1 243 Nodulin-like Gene Family AT3G43660 23.770 6.41e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10023g00001 K22736 - gmx:100793585 402.519