Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10013g00002 ATGAGTGCTCCCATGGACACAGAGCTCACAACCTATGAAAATGGCAGTGGTTCCCAACACTCACTTCCCGAGGACAAAGTACTTGTCCCTGTCGAGGTAACCCTAAAACCTTCCAGCACCGCTAAAATAGAAGATGTTCGTTCCGCCGTCGAAGGGATGCTTGAAAAGAGGAGTTTGAGCTATATCGATGGACCCATTCCGGTGCCTCTTGATGAGGCGTTTCTCGCAGATAACGTGCAAAGAATTTGCGTTTGCGGATGTGATACTGATGAAGGGAGGCACAATGATAATGTTCTTTTGTTCTGGCAAGTGAAGCCTATTGTACATGTTTTTCAGCTTAGCGAGGAAGGTCCATGTGAGGATATAAGCTCTGATGGCCAGTCTTCCAGCTTCAACGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGTTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGGGTTGACCCATTCCTTGTTTCATGGAACCGCATAATTCTGTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCTCAGAAATTAGCAATTCGATTCAATTCAAGATACCCTCAGTCCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAGAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTCGTATTTGTATTGATTGATGAAGTCGAAAGCCTCGCTGCTGCTAGAAAAGCTGCCCTATCTGGTTCTGAACCTTCTGATTCTATTAGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTGAAATCATCTCCTAATGTTATAATTCTAACAACTTCCAACATAACTGCAGCTATTGACATTGCTTTTGTTGATCGAGCTGATATCAAAGCATACGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATACGTACAGGCATCTTGACTAATTTACAGGATTGTAAGAATGTCATGCTTCCAAATTACGCATGTGCAAAGGAGAGGTTGAACGCACCAGATTTGCAGGAGGATTCTACATTCATGCAACTGTGCAAGCACCTATTGGATACAGCGGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTTTGGCACATGCTGCACTCTCAAATCCTTTTGATTGCAACCATATTAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGATTAA 1341 0.4251 MSAPMDTELTTYENGSGSQHSLPEDKVLVPVEVTLKPSSTAKIEDVRSAVEGMLEKRSLSYIDGPIPVPLDEAFLADNVQRICVCGCDTDEGRHNDNVLLFWQVKPIVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLAIRFNSRYPQSQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTNLQDCKNVMLPNYACAKERLNAPDLQEDSTFMQLCKHLLDTAEACEGMSGRSLRKLPFLAHAALSNPFDCNHIKFLCTMVETAKRERSELPD 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10013g00002 446 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 184 202 IPR001270 GO:0005524
Vium10013g00002 446 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 298 312 IPR001270 GO:0005524
Vium10013g00002 446 MobiDBLite consensus disorder prediction 1 21 - -
Vium10013g00002 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 414 IPR027417 -
Vium10013g00002 446 Gene3D - 123 347 IPR027417 -
Vium10013g00002 446 Pfam ATPase family associated with various cellular activities (AAA) 184 329 IPR003959 GO:0005524|GO:0016887
Vium10013g00002 446 FunFam pachytene checkpoint protein 2 homolog 124 346 - -
Vium10013g00002 446 SMART AAA_5 180 332 IPR003593 GO:0016887
Vium10013g00002 446 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 20 443 IPR044539 -
Vium10013g00002 446 MobiDBLite consensus disorder prediction 1 23 - -
Vium10013g00002 446 CDD RecA-like_Pch2-like 130 328 - -
Vium10013g00002 446 ProSitePatterns AAA-protein family signature. 302 321 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10013g00002 Vium-Chr10013 10616 15311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10013g00002 184 392 Calmodulin-binding Proteins AT3G56690 28.505 6.42e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10013g00002 K22399 - gmx:100795009 823.928