Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1000g00001 ATGGACCAAAATTTAACAAATCTGCAAGTTCAGGACAAGATAGGGTATAAACGATGGTCACCCACTAGAGAACAGGTCGCCTTATTAGAGGCACTTTTCGCGTTCGAGATAAGAAACCCGAACAGAGAACAAGTACATGAAATCGCGACAAGACTTAAGGTTTACGGGGAAATCGGGGAGTATAGTGTCTACTGTTGGTTCCAAAACTATGGATACCGTGAGAAACAGAGATGTCTGAAACGAAGCACCGCCACTACGTCTTACTCTCCAATTCCCCTCCTGCCCCATTTTATGGATGATCTTTCCCGCACACCGTCGTCGATGCCAGATCGGGTGACACTCGACCTTTTTTCGATTCCTCCGGTTCCTGTCAAAGTTGAGGTCCCTACCCCCTTTCGGTTCCAGGTGAAGGCCCCTTCCGTCGAACTCTCCCTGCGACTTCCTTCTACTGACGAGTAG 459 0.4858 MDQNLTNLQVQDKIGYKRWSPTREQVALLEALFAFEIRNPNREQVHEIATRLKVYGEIGEYSVYCWFQNYGYREKQRCLKRSTATTSYSPIPLLPHFMDDLSRTPSSMPDRVTLDLFSIPPVPVKVEVPTPFRFQVKAPSVELSLRLPSTDE 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1000g00001 152 Gene3D - 16 83 - -
Vium1000g00001 152 Pfam Homeodomain 17 76 IPR001356 GO:0003677
Vium1000g00001 152 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 14 84 IPR044555 GO:0003700|GO:0099402
Vium1000g00001 152 SMART HOX_1 14 81 IPR001356 GO:0003677
Vium1000g00001 152 ProSiteProfiles 'Homeobox' domain profile. 12 77 IPR001356 GO:0003677
Vium1000g00001 152 SUPERFAMILY Homeodomain-like 11 77 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1000g00001 Vium-Chr1000 2093 2629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1000g00001 18 83 Wox Gene Family AT5G05770 46.970 6.26e-16 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium1000g00001 Homeodomain 9.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1000g00001 - - vum:124821198 258.455