Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu9g01815 | ATGGGAACAAAGGCAAAGAAAGCTATGAAGAAGAACATGAAAAGGGCTTCCTCTAACAAGCCATCTGAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGCAAGCTCGCCGAACAGAAGCCGCCGGAGAATACCTCCACGGTGTTGTACGTATCCAGGATTCCGCATGGGTTCTATGAGAAGGAGATGGAAGGTTATTTTGGTCAATTTGGAACCATCAAAAGGTTGAGAATCGCGAGAAATAAAAAGACAGGAAAATCAAGACATTTTGGATACATAGAATTTGAATCTCCTGAGGTAGCGAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTCGAGCACCTTCTCCAAGTTCATGTTGTACCTCCGGAGAATGTTCATTCAAGATTATGGAGAGGATTCAGTTATCGTCACAAGCCATTGGATTATGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACCTTAGAAGAGCACAAAAAGTTGGTGGAGAGGATTCTAAAACACGACCAAAAACGACGGAAAAAGATAGAGGCTGCTGGCATTGATTACGAAAGCCCTGAGATTATGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGATGACTGA | 630 | 0.4286 | MGTKAKKAMKKNMKRASSNKPSEGADFLPLEGGPARKLAEQKPPENTSTVLYVSRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVHVVPPENVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLEEHKKLVERILKHDQKRRKKIEAAGIDYESPEIMGNIQPAPKKIKFDD | 209 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu9g01815 | 209 | CDD | RRM_NIFK_like | 50 | 123 | - | - | |
Vimu9g01815 | 209 | SMART | rrm1_1 | 50 | 123 | IPR000504 | GO:0003723 | |
Vimu9g01815 | 209 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 49 | 127 | IPR000504 | GO:0003723 | |
Vimu9g01815 | 209 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 51 | 118 | IPR000504 | GO:0003723 | |
Vimu9g01815 | 209 | PANTHER | MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN | 6 | 208 | - | - | |
Vimu9g01815 | 209 | Coils | Coil | 147 | 170 | - | - | |
Vimu9g01815 | 209 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Vimu9g01815 | 209 | SUPERFAMILY | RNA-binding domain, RBD | 32 | 137 | IPR035979 | GO:0003676 | |
Vimu9g01815 | 209 | Gene3D | - | 3 | 124 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu9g01815 | Vimu-Chr9 | 27477427 | 27479680 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu9g01815 | 49 | 122 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 32.432 | 3.68e-08 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu9g01815 | K14838 | - | gmx:100778780 | 366.696 |