Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01803 ATGGCTTCGCCGCCACCGTTAACGCTAAACGTTGTCGGATCAGACACGGACACGGAGTTCCCGACCGTCGCTTCGAGTTCCCTAACGCCGCCGTCACCGCGCCGTTCCTCTCCGTTACAGAGCCTCAGTCCCAGCATTCTCATCATCGTCACGGTCCTCGCCGTCACCGTTATTGTTTCTCTCGCGCTCTGCTTCCTCCTCCGTCACCTCAATCGCCGCTGCCTTCGCCGCTTCTCCTCCTCCTCCGCCGCGCCCTCCGCATCCGCCACGCCGATATTCTCCTCCAGCCGCCGCATCTCGCCGGAGATTGTCAACTCCTCGTCCACCGCCGCTGTCGCCGCCTCAGTCATCGACACGCTGCCGCTATTCACGTTCTCCTCCGTCACGCGCCGCTCTTCCTCCGCCGCCGCTGACTGCGCGGTCTGCCTCTCCAAGTTCCACCACCACGACCTCCTCCGCCTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACCTGGCTCCAGTCCAACCTTTCGTGTCCGCTTTGCCGCTCTCCCATAGCCGCCGCGGAATCCGACATTGCCAAAATCCTCCGCCCGCCGTCCTCCACCGCCGGCAGCAGCGACAGCTTCCGCCTCGAGTTAGGCAATATCAGCCGCCGCGGCGCCGAAGGCGCCGCGGCCACCGCCGCTCGCGGAGATTCACGGTCCCGTTCCTATTCCATTGGTTCGTTTGATTATTTGGTAGATGATGAGTCTGAGGTTGCTTTCAGCCACGCCCGCCGGAGGAGCGAGGACGATGCGAAGGAGTTTCTGGCCACCGAGACTCAGACCCCTTCCACTCACAACGAGGCGAGTCTGGCCAGCGAAGTCGCCGGCGTTAGGAGCTGGCTTAAGGATTACATGGATAGGTTTTCTGCTTCTATCTCGTCAAGAACAGCGTCTTTTCGAAGCTCCGGAAGGTTTTTCAGCGGCGGCGGGAGTAGTCGGCGAAGCGACGTGGTTCCAGTGGTGGCTGCGGAATACGACTTGGAAGGAAACCGAATTGGTGAAGAGATAAGCGAAATGTTCCGATGGCTTTCAGGGGTATGA 1083 0.6131 MASPPPLTLNVVGSDTDTEFPTVASSSLTPPSPRRSSPLQSLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSSSAAPSASATPIFSSSRRISPEIVNSSSTAAVAASVIDTLPLFTFSSVTRRSSSAAADCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSPIAAAESDIAKILRPPSSTAGSSDSFRLELGNISRRGAEGAAATAARGDSRSRSYSIGSFDYLVDDESEVAFSHARRRSEDDAKEFLATETQTPSTHNEASLASEVAGVRSWLKDYMDRFSASISSRTASFRSSGRFFSGGGSSRRSDVVPVVAAEYDLEGNRIGEEISEMFRWLSGV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01803 360 CDD RING-H2_EL5-like 138 181 - -
Vimu9g01803 360 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Vimu9g01803 360 FunFam E3 ubiquitin-protein ligase ATL4 112 186 - -
Vimu9g01803 360 SMART ring_2 139 180 IPR001841 -
Vimu9g01803 360 MobiDBLite consensus disorder prediction 9 40 - -
Vimu9g01803 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 38 289 - -
Vimu9g01803 360 SUPERFAMILY RING/U-box 117 186 - -
Vimu9g01803 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 191 IPR013083 -
Vimu9g01803 360 Pfam Ring finger domain 138 181 IPR001841 -
Vimu9g01803 360 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01803 Vimu-Chr9 27277875 27279614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01803 25 210 C3H Transcription Factor Family AT4G28890 32.632 1.41e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01803 K10663 - gmx:100817751 424.861