Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01796 ATGGCCGAAGACAACTCCACTGATGATTCTCACATCAATGAAGATAACTTCCTCACTGGGATTGTTCTTGAACCACTAGATTTCTCATTCCATAACTCTTCTACCACCACCATGCTCTCATATGATAAAAACAGTAACAGTACTAACAATGTCTTTTCCATGGGAAGTAGCTATGAAAATGCAAGCTTTGATGAGAGACATGGGAAAATGCTCAAGAGTAATAGCTCAAGCTCCATCATTTCTCATGATGTTGCAAACAACAATGCTTCTTCTTCTTCTTCAGCACCATCCTCATCCACCTTCATCTTGTCCTTTGAAAACTCAACCATGGAACCTTCTCATCACCATCATCATAGACCTAATAATGATCATGGTAGTTGCCCTAGGGATGCCCTATGTTCTTCACTTTTGAGCTCAGAAAATGACCATTTCAGCACACCAAAGGCCAAACAAGGTGCCAAGAAGTATAGAAGCTCATCTCAGATTCAAGATCACATCATGGCTGAGAGAAAAAGGAGACAGGAACTCACTGAAAGGTTCATAGCACTTTCTGCCACCATACCTGGATTGAAGAAGACAGACAAGGCCCATATACTAAGGGAAGCAATGATATACATGAAAGAACTTGAAGAGAGAGTGATTGAGCTAGAAAACCAGAATAAGAGGAAGAGAAGTGCAGAATCAAGAATATTGATAAAGAAATATTCGCAAAGAGAAGAAGAAAGAAAGTGTGATAGATCAAGTCCTCCACTTCCTCAAGTTGAAGCAAGAGTGTTGGAAAAGGAGGTTCTCATTGGAATCCATTGCCACAAACAAAAGGACATTATGGACGAACAATACTGCATGACAGTGAATAATCTTGTAAAAAGCCTGAGACAAGCTCTCTTGAAAATCACATGA 900 0.3989 MAEDNSTDDSHINEDNFLTGIVLEPLDFSFHNSSTTTMLSYDKNSNSTNNVFSMGSSYENASFDERHGKMLKSNSSSSIISHDVANNNASSSSSAPSSSTFILSFENSTMEPSHHHHHRPNNDHGSCPRDALCSSLLSSENDHFSTPKAKQGAKKYRSSSQIQDHIMAERKRRQELTERFIALSATIPGLKKTDKAHILREAMIYMKELEERVIELENQNKRKRSAESRILIKKYSQREEERKCDRSSPPLPQVEARVLEKEVLIGIHCHKQKDIMDEQYCMTVNNLVKSLRQALLKIT 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01796 299 Gene3D - 151 226 IPR036638 GO:0046983
Vimu9g01796 299 SMART finulus 166 215 IPR011598 GO:0046983
Vimu9g01796 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 224 IPR036638 GO:0046983
Vimu9g01796 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Vimu9g01796 299 PANTHER BHLH TRANSCRIPTION FACTOR 38 275 - -
Vimu9g01796 299 MobiDBLite consensus disorder prediction 139 163 - -
Vimu9g01796 299 Coils Coil 199 229 - -
Vimu9g01796 299 Pfam Helix-loop-helix DNA-binding domain 164 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01796 Vimu-Chr9 27185341 27189027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01796 140 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.811 5.28e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu9g01796 HLH 5.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01796 - - vra:106773267 504.597