Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01790 ATGAGTAAGGGAAAGGTTCATATCAACATTGTGGTCATTGGACATGTCGACTCTGGGAAGTCAACTACCACTAGTCATTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAAAGGTTCGAGAAGGAAGCTGCAGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCCGAGCGTGAAAGAGGAATTACCATCGATATTGCTTTGTGGCGTGACTTTATCAAGAACATGATCACTGGAACCTCTCAGGCTGATTGTGTTGTCCTTATTATTTATTCCACAACTGGTGGTTTTGAAGCCGGTATTTCCAAGGATGGACAAACCCGTGAACATGCGCTTCTTGCTTTCACCCTTGGTGTGAAGCAGATGATCTGTTGCTGTAAGAAGATGGATGCCACTACCCCCAAGTACTCCAAGGCTAGGTATGATGAAATCGTGAAGGAAGTTTCATCCTACTTGAAGAAGGTTGGATTCAACCCAGACAAGATTCCATTTGTTCCAATCTCTGCACTTGATCAAATCAATGAGCCCAAGAGGCCCTCAGACAAGCCACTCAGGCTCCCATTGCAGGATGTCTACAAGATTGGTGGTATTGGTATCGTGCCTATTGGACGTGTTGAGACCGGTGTCTTGAAACCTGGTATGGTGGTGACTTTTGCTCCAACTGGTTTGACAACTGAAGTTAATAAAGATAAGATTTCTGTGGATGATTCTGACCTAGCTGAGAGTGGGAAAAAAGACCCACTTGTTAGAAGGCAGGAGCTATTGATTAAGAGTGGACTTGCAGATAGTCTTCTTGATGTATGTATTGAGAGCGTGGGAGAACTGCTACATGTCGTGTGCACTGGAAACTCGTTGTGGGCAAGCATATGGAGCACAACAATACAAAAAATTTGGTGTTCAGATTTACACTGCAATTGTCTCTCTTGCTTTAGTTTGTCTTCCTCTTTCTTGTGTGCCTTCACAGTAATGTCATCATTATGCCACTGCACTGAATCACTCTCAATAGGGAGACCTCTTTAG 1047 0.4403 MSKGKVHINIVVIGHVDSGKSTTTSHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWRDFIKNMITGTSQADCVVLIIYSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCKKMDATTPKYSKARYDEIVKEVSSYLKKVGFNPDKIPFVPISALDQINEPKRPSDKPLRLPLQDVYKIGGIGIVPIGRVETGVLKPGMVVTFAPTGLTTEVNKDKISVDDSDLAESGKKDPLVRRQELLIKSGLADSLLDVCIESVGELLHVVCTGNSLWASIWSTTIQKIWCSDLHCNCLSCFSLSSSFLCAFTVMSSLCHCTESLSIGRPL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01790 348 Gene3D Translation factors 192 257 - -
Vimu9g01790 348 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Vimu9g01790 348 FunFam Elongation factor 1-alpha 1 191 - -
Vimu9g01790 348 SUPERFAMILY Translation proteins 189 243 IPR009000 -
Vimu9g01790 348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 207 IPR027417 -
Vimu9g01790 348 CDD EF1_alpha 9 186 - -
Vimu9g01790 348 Gene3D - 1 191 IPR027417 -
Vimu9g01790 348 PANTHER TRANSLATION FACTOR 178 250 - -
Vimu9g01790 348 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Vimu9g01790 348 PRINTS GTP-binding elongation factor signature 131 140 IPR000795 GO:0003924|GO:0005525
Vimu9g01790 348 PRINTS GTP-binding elongation factor signature 87 98 IPR000795 GO:0003924|GO:0005525
Vimu9g01790 348 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 232 IPR000795 GO:0003924|GO:0005525
Vimu9g01790 348 Pfam Elongation factor Tu GTP binding domain 6 78 IPR000795 GO:0003924|GO:0005525
Vimu9g01790 348 Pfam Elongation factor Tu GTP binding domain 79 183 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01790 Vimu-Chr9 27130637 27131806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01790 1 236 Eukaryotic Initiation Factors Gene Family AT5G60390 80.505 1.41e-154 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01790 K03231 - pvy:116114398 418.698