Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01784 ATGAAGTGCTTTCACTATTTCAGAGATAAATCTAGAAACGGTAGGCAAAGGTCAGCACCTGAACTGAAGGAGAAAGAGAAACTGGACTTTTCAGGGGCTGAGAGGGTCACCAAGTCTTCAAGCTCATCTGCTTCACCCCGCGGTATACCGGAACTGTATGAGGAGAAGGGTCAGAATTTGAGGGTCTTCTCCCTCTCAGAGCTCAAGCGTGCAACAAGTGATTTCAACAGGCTTTTTAAGATAGGAGAAGGTGGATTTGGAAGTGTGTTTAAAGGTTCAATCCAGCCTGCTGATGGGAATGGGAATCCTGTTGTAGTTGCTATCAAAAGGCTTAACAAGGATGCATTACAGGTGATGGGGACGTATGGTTATGCTGCTCCAGATTACATTGAGACAGGTCATCTCACAGCAAAGAGTGATGTGTGGAGTTTTGGAGTGGTTTTATATGAAATGCTTACTGGCAGGCGTTCAATGGAAAGAAACAGGCCTAAATCAGAGAAGAAACTGCTGGAGTGGGTGAAGCAATACCCTCCTGACAGCAAGAAGTTTGACACAATCATTGATCAGAGACTTCAAGGAGAGTATTCCAAGAATGGAGCAAGAAAACTCGCAAAACTCGCCGATCATTGCCTGCGTAAGAGTGCGAAAGATCGGCTGACGATGAGTCAGGTGGTGGAGAGACTGAAGCAGATAATGGAAGACACTTCTGAAGCAGATGACAGAAGTGTTGAGGTATCAGAAAATGGTCAAGCTGAGGCTGAAGAGAAGGGAAATCAATTAAGGTCTTCAGAGTTGTGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAAAGTGTGGAGAGTGCTGGCAGAAAAAGATTTATGATCCTTCAGAGAGCCAATGTGTCCTCATAG 897 0.4482 MKCFHYFRDKSRNGRQRSAPELKEKEKLDFSGAERVTKSSSSSASPRGIPELYEEKGQNLRVFSLSELKRATSDFNRLFKIGEGGFGSVFKGSIQPADGNGNPVVVAIKRLNKDALQVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEMLTGRRSMERNRPKSEKKLLEWVKQYPPDSKKFDTIIDQRLQGEYSKNGARKLAKLADHCLRKSAKDRLTMSQVVERLKQIMEDTSEADDRSVEVSENGQAEAEEKGNQLRSSELWKKRMEHLAKLGESVESAGRKRFMILQRANVSS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01784 298 MobiDBLite consensus disorder prediction 8 33 - -
Vimu9g01784 298 PANTHER OS01G0588500 PROTEIN-RELATED 39 114 - -
Vimu9g01784 298 SUPERFAMILY Protein kinase-like (PK-like) 60 226 IPR011009 -
Vimu9g01784 298 Gene3D Transferase(Phosphotransferase) domain 1 117 265 - -
Vimu9g01784 298 MobiDBLite consensus disorder prediction 232 251 - -
Vimu9g01784 298 Pfam Protein kinase domain 115 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01784 298 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01784 298 Gene3D Phosphorylase Kinase; domain 1 53 116 - -
Vimu9g01784 298 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Vimu9g01784 298 MobiDBLite consensus disorder prediction 8 50 - -
Vimu9g01784 298 MobiDBLite consensus disorder prediction 232 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01784 Vimu-Chr9 27063333 27068689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01784 110 231 Receptor kinase-like Gene Family AT4G02010 40.164 1.00e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu9g01784 Pkinase 3.6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01784 - - gmx:100781858 301.212