Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01783 ATGGATGACGAGTCATGGCAAAAATGGGTTTCATTTTTGGATGAAAATGATTGGGATACTTTAACTGATTTTGACATGAACTCCGTTGGAGAAGAAATTAAGGGGGACAGTTCTGTTGTTGTGGTGCCTGCAGAAGACTCATTGAAAGAAAGCAGCACTGCAGAAGACTCATCTTTGGAAAAGAACACTGGCTTTGACATGACAAGTCTCACACAACAACATGCTTCTTCACAGAAACCAAAGTCTTGTGTTCTGTCGTTTGAGAATTTCACTTCAGTTCCAATTTTTGGTAAGAAAACATGGCAACATCTTGGTGAACACTCAAATCAGACTCAAGAAAAAACCAGAAAACCCCTTAAGAGGGAAAGAAACGCTTCTCAGACACTTGATCACATAATGGCTGAGAGAAAAAGGAGAGAGAATCTCACCAAAATGTTCATTGCCCTTTCTGCTCTTATTCCTGGCTTGAAAAAGGTGGACAAGGTTTCTGTTCTGAACAAGGCCATAGAATACGTGAAGAGTCTGGAGCAGCGTGTGAATGATTTGGAGAAAGAGAATAAGAAGAGGAAGATAGAATCAGAAGGATGCTTGAAAGTGAGGAAAAGAAACATGGTTGGTTATGAGTTTTCATGGAGCTCTGATGCTTGTTATGATGATGAGAAAGCTAGCAATAAATGTTGGAAGGTTGAAGCAAGAGTTGCAGGAAAAGATGTACTTATCAGAGTAACGTGTGAGATGCAAAGGAATGTTGTGCAGAAGTTAATGGCAAAGCTTGAAGCTCATAATCTCTCTGTTGTTTCCAGCAATGTTTTGCCTTTTGGAAATTCTGCTCTCACCATTACCAGCATTGCTCAGATGAACCCTAAATTCACCACCAGAGTTGACAACTTTGTGAAAAGGTTGACTGAGGATTTGTCCAAAGTGCTGTAA 930 0.4011 MDDESWQKWVSFLDENDWDTLTDFDMNSVGEEIKGDSSVVVVPAEDSLKESSTAEDSSLEKNTGFDMTSLTQQHASSQKPKSCVLSFENFTSVPIFGKKTWQHLGEHSNQTQEKTRKPLKRERNASQTLDHIMAERKRRENLTKMFIALSALIPGLKKVDKVSVLNKAIEYVKSLEQRVNDLEKENKKRKIESEGCLKVRKRNMVGYEFSWSSDACYDDEKASNKCWKVEARVAGKDVLIRVTCEMQRNVVQKLMAKLEAHNLSVVSSNVLPFGNSALTITSIAQMNPKFTTRVDNFVKRLTEDLSKVL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01783 309 MobiDBLite consensus disorder prediction 109 125 - -
Vimu9g01783 309 Coils Coil 165 192 - -
Vimu9g01783 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Vimu9g01783 309 PANTHER BHLH TRANSCRIPTION FACTOR 52 305 - -
Vimu9g01783 309 MobiDBLite consensus disorder prediction 102 125 - -
Vimu9g01783 309 SMART finulus 132 181 IPR011598 GO:0046983
Vimu9g01783 309 Pfam Helix-loop-helix DNA-binding domain 131 176 IPR011598 GO:0046983
Vimu9g01783 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 190 IPR036638 GO:0046983
Vimu9g01783 309 Gene3D - 123 198 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01783 Vimu-Chr9 26993698 26995321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01783 8 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 35.629 4.71e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu9g01783 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01783 - - vun:114166535 428.713