Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01782 ATGGTTGTTATGGTGTTTTATTCAGGACCAGCAAGATGTTATCGTCAAATTAAGAACAAACCCTACCCAAAATCGCGGTTTTGCCGTGGTGTTCCTGATCCTAAGATCAGGATTTACGATGTTGGCATGAAGAAAAAAGGTGTTGATGAATTTCCCTTCTGTGTGCATTTGGTTAGTTGGGAGAAGGAGAATGTTTCTAGTGAGGCCCTTGAGGCTGCTAGGATTGCGTGCAACAAGTACATGGCAAAATTTGCTGGGAAGGATGCATTCCACTTGAGGGTTAGGGTTCATCCCTTCCATGTTCTTAGGATCAACAAAATGCTTTCGTGTGCTGGAGCTGATAGGCTCCAGACCGGCATGAGAGGTGCCTTTGGAAAGCCACAGGGTACTTGTGCTAGAGTGGCTATTGGCCAGGTCCTGCTCTCTGTACGCTGCAAGGACAGCAACAGTCACCATGCACAAGAGGCCCTCCGCCGTGCTAAATTCAAGTTCCCTGGCCGCCAAAAGATTATAGTTAGCAGGAAGTGGGGGTTCACCAAGTTTAACCGCACAGACTATTTGAAGTTCAAGTCAGAGAACAGGATTATGCCTGATGGTGTCAATGCCAAGCTTCTTGGGTGCCATGGACCATTGGCTAATCGCCAACCAGGAAGAGCCTTTTTGTCCAGTGCTACTGCCTAG 681 0.4772 MVVMVFYSGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSSATA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01782 226 PANTHER 60S RIBOSOMAL PROTEIN L10 10 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vimu9g01782 226 Gene3D Ribosomal protein L10e/L16 8 222 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vimu9g01782 226 ProSitePatterns Ribosomal protein L10e signature. 113 134 IPR018255 GO:0003735|GO:0005840|GO:0006412
Vimu9g01782 226 CDD Ribosomal_L16_L10e 46 171 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vimu9g01782 226 Pfam Ribosomal protein L16p/L10e 17 171 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vimu9g01782 226 SUPERFAMILY Ribosomal protein L16p/L10e 10 178 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vimu9g01782 226 FunFam 60S ribosomal protein L10 7 211 - -
Vimu9g01782 226 NCBIfam 50S ribosomal protein L16 10 179 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01782 Vimu-Chr9 26975780 26977234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01782 10 225 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.574 3.28e-142 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01782 K02866 - gmx:100815571 441.425