Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01780 ATGCAGCTTACACACCTGTGCCTTGTCATGCCCTCAGACTATGATAAACTAGAGCCACTTCATGCAACCCCACCAAAACAGAAAAAAGTTAAGGCCAAAAAGGACTTCCAAGGGGCATGTGGAGGCCATGTTGTTGCTACCCTTCAAGGTTCCTTAACAAGGTTGTGTGAGTCAAAGTGGTGGAATCTATGCCAAGATGGTGCAAGAGAAAGCAAGCAGATCAAGGCCTCATCTTGTGTGTTTCATGATATGGAGGGTGTGCAACTCTCTTCAAAGATTGGAAGGGACAGCAACAATCCAAGGATTTTCAGCTACGCTGAGCTGTACATAGGGTCAAGGGGTTTTTCTGAGGAGGAGGTTCTAGGAAGTGGAGGTTTTGGCAAAGTGTACAAAGCTGTTATGCCTAGTGATGGAACAGTGGTGGCTGTGAAGTGTTGCTTGGCAGGGAAAGGTGGCCAGTTTGAGAAGACTTTTGCGGCAGAACTAGCAGCAGTGGCACACCTTCGCCACAAGAACCTTGTTCCCTTGAGGGGTTGGTGTGTTTTTGAGGATCAACTTTACCTTGTGTATGACTACATGCCTAATCTCAGCCTTGACCGGGTGCTGTTTCGGAAGAACTTGAAGGAGGAGCCACTTGGGTGGGTGAGGCGTGGGAAAATTGTGAAGGGTTTGGCATGTGCGTTGCACTATCTGCATGAGCAGTTGGAGACTCAGATCATTCACAGGGATGTGAAGACCAGCAATGTGATGCTTGATTCCCATTACAATGCTAGGTTGGGGGACTTTGGCTTGGCAAGGTGGCTTGAGCATGAGCTTGAGTACGAGTATGAGACTAGGAAAGAAGCATCAGCATCAAGCAAGTTTGAGCATTTCAGGTTGAGTGAGACCACAAGGATTGGTGGCACAATTGGGTACTTGCCCCCTGAGAGCTTCCAGAGAAGAAGTGTTGCAACCTCAAAATCTGATGTTTTCAGCTTTGGAATCGTTGTGTTGGAGGTGGTGTCTGGAAGGAGAGCCATTGATCTCACATACCCTGATGAGAAAATCATCTTGGTTGATTGGATCAGAAGACTCAGTGATGAAGGGAGACTCGTTGATGCTGGGGATACAAGGCTGATATACGGTTCCTACAAGGCTTTTGAGATGGAGCATTTGATTCACATAGGCCTCTTGTGCACACTCCATGACCCTGTGTTGAGACCAAGCATGAAGTGGATTGTAGAAGCACTTTCTGACATGTCAAATAAGTTGCCAACACTCCCTTCGTTTCACTCCCATCCTATGTACATCTCTTTGTCTTCTTCATCTGAGACTAGTCCAAGCAGCTCAAAAGGGACTGGCTCTAGCACAGGTACAGAAAGTTCTAGCAATCATTCTAGTTCCATTTCAAAATATGTCACTGCCACAGGAGATACCATATATGTAACAGCTGAAGCTGAACAGAGAAACGGTGGAACTAACTCTTGTAAGAGTAGCAAGAGAACGATACATAAGCAGCCATCGATTTCTGTGGTTCAAACACCTAGGGAGATACCATTCAAGGAGATTGTTTCAGCCACAGAGAACTTCTCAGAGTCCAAAAGGGTGGCCGAGTTAGACTTTGGAACTGCTTACCATGGCATCCTAGATGGCCACTGCCATGTCATGGTGAAACGCCTTGGCTTGAAGACATGCCCTGCACTGCGCCAAAGATTTTCCAATGAGCTAAGAAACCTTGCAAAACTTCGCCACAGGAACTTGGTGCAGCTCAGAGGGTGGTGCACTGAGCAAGGAGAGATGCTTGTGGTGTATGATTACTCAGCTAGAAGATTTCTCAGCCACCAACTTCACCATCATGTCAATGGTACTAAAAAGGGTTATTCTGTTCTGAAATGGCATCATAGGTACAACATAGCGAAATCACTTGCATCTGCACTTCTCTATCTGCATGAGGAATGGGATGAACAGGTCATTCACAGGAACATAACCTCTTCAGCAGTGACTCTTGAACCTGACATGACCCCAAGACTAGGTAGTTTTGCTCTGGCTGAGTTTCTTTCAAGGAATGAGCATGGCCATCATGTGATCACCACCAGAAACAAGTCTGTTTGTGGGATTTACGGCTACATGTCACCAGAATATGTGGAATCAGGAGAAGCAACAGTGGCTGCTGATGTTTATAGTTTTGGTGTGGTGGTTCTTGAGATTGTGAGTGGACTTAAGGCTGTGGATTTTAGGCAACCTGAGGTGCTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGAAAAAGATCACTTGAGGCACTAGCAGATACAAGACTAAATGGAGAATACAATCAAAAGGAGCTAATGAGATTGGTGAGGTTAGGAGTTGCATGCACCCGTTCTGACCCAAATCTAAGACCAAGCACAAGACAGATAGTTAGCATCCTTGATGGAAATGAGAAATTAATCATGGGCGAGAACATGGAGAGCAGGGAAGATTGGAGAGAAAGAAACGCTTGCTCTTTGTCTCTGGTCAAGAGAATCCAAGCTCTAGGAATACAATGA 2529 0.4575 MQLTHLCLVMPSDYDKLEPLHATPPKQKKVKAKKDFQGACGGHVVATLQGSLTRLCESKWWNLCQDGARESKQIKASSCVFHDMEGVQLSSKIGRDSNNPRIFSYAELYIGSRGFSEEEVLGSGGFGKVYKAVMPSDGTVVAVKCCLAGKGGQFEKTFAAELAAVAHLRHKNLVPLRGWCVFEDQLYLVYDYMPNLSLDRVLFRKNLKEEPLGWVRRGKIVKGLACALHYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHELEYEYETRKEASASSKFEHFRLSETTRIGGTIGYLPPESFQRRSVATSKSDVFSFGIVVLEVVSGRRAIDLTYPDEKIILVDWIRRLSDEGRLVDAGDTRLIYGSYKAFEMEHLIHIGLLCTLHDPVLRPSMKWIVEALSDMSNKLPTLPSFHSHPMYISLSSSSETSPSSSKGTGSSTGTESSSNHSSSISKYVTATGDTIYVTAEAEQRNGGTNSCKSSKRTIHKQPSISVVQTPREIPFKEIVSATENFSESKRVAELDFGTAYHGILDGHCHVMVKRLGLKTCPALRQRFSNELRNLAKLRHRNLVQLRGWCTEQGEMLVVYDYSARRFLSHQLHHHVNGTKKGYSVLKWHHRYNIAKSLASALLYLHEEWDEQVIHRNITSSAVTLEPDMTPRLGSFALAEFLSRNEHGHHVITTRNKSVCGIYGYMSPEYVESGEATVAADVYSFGVVVLEIVSGLKAVDFRQPEVLLVKKVHEFEMRKRSLEALADTRLNGEYNQKELMRLVRLGVACTRSDPNLRPSTRQIVSILDGNEKLIMGENMESREDWRERNACSLSLVKRIQALGIQ 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01780 842 ProSiteProfiles Protein kinase domain profile. 523 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01780 842 Gene3D Phosphorylase Kinase; domain 1 484 599 - -
Vimu9g01780 842 SUPERFAMILY Protein kinase-like (PK-like) 497 804 IPR011009 -
Vimu9g01780 842 PANTHER - 76 412 - -
Vimu9g01780 842 Pfam Protein tyrosine and serine/threonine kinase 527 804 IPR001245 GO:0004672|GO:0006468
Vimu9g01780 842 FunFam Receptor like protein kinase S.2 87 192 - -
Vimu9g01780 842 ProSiteProfiles Protein kinase domain profile. 115 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01780 842 SMART serkin_6 115 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu9g01780 842 FunFam Receptor like protein kinase S.2 601 827 - -
Vimu9g01780 842 Gene3D Phosphorylase Kinase; domain 1 87 192 - -
Vimu9g01780 842 MobiDBLite consensus disorder prediction 477 501 - -
Vimu9g01780 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vimu9g01780 842 FunFam Receptor like protein kinase S.2 193 416 - -
Vimu9g01780 842 SUPERFAMILY Protein kinase-like (PK-like) 98 440 IPR011009 -
Vimu9g01780 842 ProSitePatterns Protein kinases ATP-binding region signature. 121 150 IPR017441 GO:0005524
Vimu9g01780 842 Gene3D Transferase(Phosphotransferase) domain 1 193 418 - -
Vimu9g01780 842 MobiDBLite consensus disorder prediction 434 462 - -
Vimu9g01780 842 Gene3D Transferase(Phosphotransferase) domain 1 605 827 - -
Vimu9g01780 842 FunFam Receptor like protein kinase S.2 483 599 - -
Vimu9g01780 842 Pfam Protein kinase domain 116 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01780 Vimu-Chr9 26967708 26970809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01780 507 810 Receptor kinase-like Gene Family AT5G59270 37.049 7.12e-55 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu9g01780 PK_Tyr_Ser-Thr 7.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01780 - - gmx:100781955 1457.58