LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu9g01760	ATGGAAGGAGAGAGAGGTGTTAATCCAAGCTATGATCTTCAAGTTTCATTCACCAACACCCCTCAAGCGATCCATGAAATGGGTTTTGTCCAATTTGAAGAAAATCAGGTTCTTAGCTTCTTGGCACCCTCAGCTCAATCCCAATCTTCTCAGCTCTCACAGTCTCTAACCGGTGGCGGTGGTGTCCGCGACAACAACACCGTCACCGCCGCCACAGTCACCACCACCATCGCTACCACTACCACTTCTGGATCAGTTGGTTTTAACCATAATGACCTTGCATCCAGAAGTTCTTGGAACAATGAACAGGTGAGAACACTGGATCCTAAAGCTGTCAATGATGAAAATTGCACCGGAAATACCAGTGATGGCAACAACACATGTAGGTGGAGAAGTTCAGGGTCAGAGAAGAACAAGGTGAAAGTGAGGAGGAAGCTGAGAGAACCAAGGTTTTGTTTTCAGACAAGAAGTGATGTGGATGTTCTTGATGATGGTTACAAATGGAGGAAGTATGGTCAGAAAGTTGTGAAGAACAGCCTTCACCCAAGGTAA	552	0.4583	MEGERGVNPSYDLQVSFTNTPQAIHEMGFVQFEENQVLSFLAPSAQSQSSQLSQSLTGGGGVRDNNTVTAATVTTTIATTTTSGSVGFNHNDLASRSSWNNEQVRTLDPKAVNDENCTGNTSDGNNTCRWRSSGSEKNKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPR	183

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu9g01760	183	Gene3D	WRKY domain	149	183	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vimu9g01760	183	Pfam	WRKY DNA -binding domain	163	183	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vimu9g01760	183	ProSiteProfiles	WRKY domain profile.	157	183	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vimu9g01760	183	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	66	183	IPR044810	GO:0003700
	Vimu9g01760	183	SUPERFAMILY	WRKY DNA-binding domain	154	183	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu9g01760	Vimu-Chr9	26794859	26796203	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu9g01760	3	183	WRKY Transcription Factor Family	AT2G44745	45.745	2.25e-34	119

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vimu9g01760		WRKY	1.9e-06	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu9g01760	-		-	var:108347245	308.531