Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01740 ATGCACGGGTATCTGGTAACTGGTACCTATGGCTTTACCGTGTGTTGTAATGTGGAGTTGGATATTCATGATACTTTTATGACTACAGGGAAGATATATTGTTATTTCAATTTCATGGATGACACTATATATATTATTAGTTCGTCAGATGATGATGAGTTGGAGGAGATAGATGTTCAAAACAGAACTCTTCCAACAACTACTGAAAGGAGTTCAGGGGCTAATAGTTCAAACCTAAGTTCTTCTAGTTTGTATAATCATTCACAAATCAAACCTCTTACACTACCTGTGTCCAGTACCAATGCACTAAACCACAGAATTGCACGAAGAGATGAACCTTCATATCATGCTCAGAATGGAAACACGAGTCAGCAACAACCAGTTAATTCCCGAATTTCAAAGTCTCATGGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCCTTCAACTCTTCAGCCTTCTGTAACAAGGGCTCTTCCTTCTCCTTTATTTGCATCAGACATCCGATTAAGCAACCTAAAAGATAGCACAGACAATAGTCATATTCATGATACATATAAGAATCGCCGCCAGGGAATAGGACCTAGCATATCCGGTGATAGGGCCTATATTCGTGATAATTTTATCAGGGGCTATGACGAAGGTCATTTACTGTATCAAAATGGCGGGAGCAGGATTCTTCCACCATCTTTGGTGCTTGGAAAGGCCATAACTCCACACTTTGCAATTTCTAGTGAATCTGCATATCGTTCTGGAATAGGTGATGAAAGGTCTGCCGAAAATGACGAGAGACTTATTTACGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAGTATCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCAAAAACAGATGATGTGTTCAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGATGACAATGGTGGTATAGATGTGGAAAAGCATAAAAATAGTGTGGAAGCTGATGATTTGTTTCCTAGTAGAGAACCTAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCGGGTACCCTAGTTGTCTGCCCTGCCAGTGTTATGCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTAGTTTATCATGGGGGCAGTAGGACTAAGAATCATGTTGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCTAAGCAACCATTAGTTGAGGATGATGATATTGAGGACAAAAATGGGGAAAGATTTGGGTTATCTTCTGAGTTTTCTGTTAAAAAAAGGAAAAAACCATTTAACGGAAATAAGAAGGGTAAAAAAGGTAGAAAAGGAATTGATAGTTCTATGGAATGTGGTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACGATAAAAAATCACAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAACACCATAAAGGTTCCTATATCCCGAAATTCTGGTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGAACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGTAAAGTGGATTTCTCCGTTGAGGAGCGAGCCTTCTATACCAAGTTGGAATCAGACTCACGCACTCGATTTAGTGCATATGCTGCTGCTGGGACAGTCAATCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTCCGACAGGCTTGTGATCATCCACGTCTTGTTAAAGATATTGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAACTCTTCCAAGGGAATTGCTGATTAATCTGTTTGATTGTTTGGATGCAACCTTTACTATCTGTCATGTTTGCCATGATCACCCTGATCGCCCTGTTATTACAATGTGTGGCCATGTCTTCTGTTATGAATGCGTACAGGAATATTTGTCTGGTGATGATAATACTTGCCCTGCTGTTAATTGTAAAGAAACAATCGGTGATGATCTTGTTTTCTCCAAAGTTACTTTGAAGAGTTGTATCTCTGATGAGGGAGGCACTTCTAGTTCTTCAAATTCACATCTTAGTGATTATTCGCAAGTGCAGCGGGATGATTACATTTCATCTAAAATCAAAGCTGTTCTTGAGGTTTTGCAGTCAAATTGTAACGTGAAAATATCTAATTCTGACTTACCGAACCCTGGATGTTGTAGAGATTCGCCGTCTTCTGTTGATCTAGATGTTGATCACAGTGATTCAGAGGCTAGGGTTGCAAAACACACGAGAAAGTATTCAGGGTCCACAACTGAAGGATCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGACATCATTGTGTCAATATGGTATAGTGTACAGGAGACTTGATGGTAGGATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGGCGGGAAATCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACTGTGACAAGGATTACTATAAAAGATACCGTTGAAGATCGGATACTGTCTCTTCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGTGGGTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTCTTCATGATTTGGCATGGAGTTGGAATGGTTGTTCTGAAGGAGGGTATGACTTTTTTTGGTGCCTGCTTTGCAAAATTTGGTAGGAGAGGCTTGGTTGATCCAAGTGGTAATTTAATCTGTTTTGAAGCCCACAAGGGCAATTTTGTCCTCCATGCTATTATATAG 3267 0.4013 MHGYLVTGTYGFTVCCNVELDIHDTFMTTGKIYCYFNFMDDTIYIISSSDDDELEEIDVQNRTLPTTTERSSGANSSNLSSSSLYNHSQIKPLTLPVSSTNALNHRIARRDEPSYHAQNGNTSQQQPVNSRISKSHGADYEKMSSQQAFKRTLPSTLQPSVTRALPSPLFASDIRLSNLKDSTDNSHIHDTYKNRRQGIGPSISGDRAYIRDNFIRGYDEGHLLYQNGGSRILPPSLVLGKAITPHFAISSESAYRSGIGDERSAENDERLIYEAALQDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQRETKSLHCLGGILADDQGLGKTVSMISLILALRSLQSKSKTDDVFNHKTEALNLDDDDDNGGIDVEKHKNSVEADDLFPSREPSSSTQAPGRKRPAAGTLVVCPASVMRQWARELDEKVGDEKLSVLVYHGGSRTKNHVELAKFDVVLTTYSIVTNEVPKQPLVEDDDIEDKNGERFGLSSEFSVKKRKKPFNGNKKGKKGRKGIDSSMECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSGQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSVEERAFYTKLESDSRTRFSAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPVGKDSVEMAKTLPRELLINLFDCLDATFTICHVCHDHPDRPVITMCGHVFCYECVQEYLSGDDNTCPAVNCKETIGDDLVFSKVTLKSCISDEGGTSSSSNSHLSDYSQVQRDDYISSKIKAVLEVLQSNCNVKISNSDLPNPGCCRDSPSSVDLDVDHSDSEARVAKHTRKYSGSTTEGSIKAIVFSQWTSMLDLVETSLCQYGIVYRRLDGRMTLGARDKAVRDFNTEPEAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILSLQEEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMIWHGVGMVVLKEGMTFFGACFAKFGRRGLVDPSGNLICFEAHKGNFVLHAII 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01740 1088 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 875 1032 IPR001650 -
Vimu9g01740 1088 Pfam SNF2-related domain 301 703 IPR000330 GO:0005524|GO:0140658
Vimu9g01740 1088 SMART ultradead3 294 604 IPR014001 -
Vimu9g01740 1088 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 82 1036 - -
Vimu9g01740 1088 MobiDBLite consensus disorder prediction 180 203 - -
Vimu9g01740 1088 Pfam Helicase conserved C-terminal domain 891 979 IPR001650 -
Vimu9g01740 1088 MobiDBLite consensus disorder prediction 364 387 - -
Vimu9g01740 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 625 IPR027417 -
Vimu9g01740 1088 SMART helicmild6 905 979 IPR001650 -
Vimu9g01740 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 734 791 IPR013083 -
Vimu9g01740 1088 Gene3D - 640 1037 IPR027417 -
Vimu9g01740 1088 MobiDBLite consensus disorder prediction 364 408 - -
Vimu9g01740 1088 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 313 587 IPR014001 -
Vimu9g01740 1088 Gene3D - 272 359 IPR038718 -
Vimu9g01740 1088 Gene3D - 514 638 IPR038718 -
Vimu9g01740 1088 CDD SF2_C_SNF 889 988 - -
Vimu9g01740 1088 MobiDBLite consensus disorder prediction 62 83 - -
Vimu9g01740 1088 ProSiteProfiles Zinc finger RING-type profile. 741 780 IPR001841 -
Vimu9g01740 1088 MobiDBLite consensus disorder prediction 115 147 - -
Vimu9g01740 1088 Gene3D - 395 481 IPR038718 -
Vimu9g01740 1088 Pfam Zinc finger, C3HC4 type (RING finger) 740 785 - -
Vimu9g01740 1088 MobiDBLite consensus disorder prediction 180 194 - -
Vimu9g01740 1088 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 506 637 - -
Vimu9g01740 1088 MobiDBLite consensus disorder prediction 114 147 - -
Vimu9g01740 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 1036 IPR027417 -
Vimu9g01740 1088 ProSitePatterns Zinc finger RING-type signature. 756 765 IPR017907 -
Vimu9g01740 1088 SMART ring_2 741 779 IPR001841 -
Vimu9g01740 1088 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 391 478 - -
Vimu9g01740 1088 CDD DEXDc_SHPRH-like 298 625 - -
Vimu9g01740 1088 SUPERFAMILY RING/U-box 739 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01740 Vimu-Chr9 26640463 26648399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01740 41 946 RAD5 or RAD16-like Gene Family AT1G50410 54.369 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu9g01740 SNF2_N 1.3e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01740 - - gmx:100795142 1579.69