Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01712 ATGTATCTGAAGGAAGCTGTTGAGAAACTGTCAGCTATGAATCATCCTGATGGTGATTGTCCATTGTGTTTATTCCCTTTGGTCCCAGAAGATCAGCAAAGCGAAACTTTGCCTTTCATGAAGTTAATGTCTTGTTTTCATTGCTTCCACAGTGAATGTATCATTAGATGGTGGAAATGGCTTCAAAGTTCTAAAGAACCTGACTCTGCCAATACAGACAGTGCAGCTGCACATCGGAACCATGACAATCATAAGAAAATGGAAGAGAGTGTCGGAAACTGCCCTGTCTGTCGCAAACCTTTTCTTGCCAAGGATTTGGACCATGTGCTTGCCCTAGTTGGATCATACTCTTCCCAATCGTTAGATGATAGGCCTAGTTGGGACATGGATGAATTGCCTTTGGGTCAATCTTTCAATCTGATAGAATTATCAGAGGAGCTACGCGATGGAGAACAGGTAAATGCACTGGAGGAAAGGTTGGAAAGAAGGTTCGAGTCCATGGAAGCCAGGTTGGAGGAGATTCGAGCAGAGATGAGAGGAATGGCTCGAAGCGCAAATGGCGACCGTGGAAGACGAAACATTAATCGCGACCATGGGAGAAGAAGGAACCAGTGTCGGAGCACCGAAGGAAGTCGCGATTCCGTCAACGCTGAACACGAACAGCGACCACCAGAGAAGTCGGAGGACGAAGCGGAAGAGGACAAAGAAGACGTGCAACGTAGCTGGAGGAAGCGCGTTGAACTACCAACGTTCGAAGGAGCGGACCCCATGGGTTGGATCGCACAGGCGGAGAAACTCTTCAAACTCCAGAGCGTGACGGAAAAGGAGAAGATGAAGTTCGTTTATAGATGCATGGAGGGAGGTTTAGCGAGTTTCTGGTTCCGCTTCTGGCGGAAGAAAACCACGCGTCCGACGTGGAAGAGGTTCACCGATGATCTGACGCGGAGGTTTGGCGGACTAAATCGGGACACTGTTGTTGAGGAGCTGGCAGCAGAGCGGCAAGAGGGGAGCGTCGACGAAGACATCCAGGAGTTGGAAATTCTGGTGCCGCGAGCATCGGGAAAACCATATCACTCCTCACTTTCTGTCTCGGTTAATCTTGGAGCTAACATTATAAATCGTGGTGGGACTGTAGGGAAAGGAGGTACGACAAGGGGAACATGTAACTCAAGCTCGGAGACAGTCGCGAGGACGGAGATGTATCGGGGATCGTCGGAGGTAATTGTCGACGCCGGTGGAGTGCAGGAAGACAAAGAAAAGGTGGTAGAGGAGGGTGCCGAAACCGAACAAAAAACCATGGAATTATTTGTATTATCTGCAGGTGGTTTAACGCAGGAGAAAAAGGTATTGGTGTTGATTGTTAATGGGGCGAGTCATAACCTTATTTCCATCCGATTGGTGGAGGAATTGGGGCTGAAAAGTGAGGATGTGCCCCTTTATAATGTATATTTAGGTGATGGGGCTGCCTTGTCTTATGATGGAAACTGCTGGTTGTTATGTTTGACAACAAATAGTTTAGCTGATGCTGGATATCCAGGTGCTGCTTCACTGGGTGATGCGGTTGGTGGCATGGCCACGACAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCCCACTGATAAGGAAGTCAAATGGGGAGGGGATTACAAAGCAATCGTGCAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAGTGCCTGCTGTTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTAGTGAAATATTTGGAAGTTTTTGTCGACTAAAAGGTCAAGATAACCTGACTAATGTTATGATTTCAATATACCGTGGAATAAGTGGCCAAGATTATGAGAAGTTACCAGTTGGATTTTTTGATAGAAATGGAGAATTTATTCAGAGTTCTATAACAGCAAACAAGAGAATTGATGCTGGTGGGAATATACTTGGCTGTTTTTGCTTCTTGCAGGTTGTAACGTCAGATCTGAATCAGTTATCTGAAGAACACAAGCCAATAAGCAGAGAAAACAATTCGGAATCCAAAGAGTTAGCTTATATACTACAAGAGATTGAAACCATGACTTTGTCTTGGAGCTTGAGCCAAGCGGAATTTGTGGAGGGGGAGACAGAAGAGAGTGACTTAACTCCCAATAAAGAGGGACTTGCAGAGGGGAGAGAGCTGCCGGAAGCATTGAAAGACATCAAAGATCATCTTCTCTAG 2262 0.4607 MYLKEAVEKLSAMNHPDGDCPLCLFPLVPEDQQSETLPFMKLMSCFHCFHSECIIRWWKWLQSSKEPDSANTDSAAAHRNHDNHKKMEESVGNCPVCRKPFLAKDLDHVLALVGSYSSQSLDDRPSWDMDELPLGQSFNLIELSEELRDGEQVNALEERLERRFESMEARLEEIRAEMRGMARSANGDRGRRNINRDHGRRRNQCRSTEGSRDSVNAEHEQRPPEKSEDEAEEDKEDVQRSWRKRVELPTFEGADPMGWIAQAEKLFKLQSVTEKEKMKFVYRCMEGGLASFWFRFWRKKTTRPTWKRFTDDLTRRFGGLNRDTVVEELAAERQEGSVDEDIQELEILVPRASGKPYHSSLSVSVNLGANIINRGGTVGKGGTTRGTCNSSSETVARTEMYRGSSEVIVDAGGVQEDKEKVVEEGAETEQKTMELFVLSAGGLTQEKKVLVLIVNGASHNLISIRLVEELGLKSEDVPLYNVYLGDGAALSYDGNCWLLCLTTNSLADAGYPGAASLGDAVGGMATTRINSKHFLFWFRSPTDKEVKWGGDYKAIVQSLSPLIPPIFSSDESACCSEWNAAMERLTGWKRDEVIGKLLPSEIFGSFCRLKGQDNLTNVMISIYRGISGQDYEKLPVGFFDRNGEFIQSSITANKRIDAGGNILGCFCFLQVVTSDLNQLSEEHKPISRENNSESKELAYILQEIETMTLSWSLSQAEFVEGETEESDLTPNKEGLAEGRELPEALKDIKDHLL 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01712 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 112 IPR013083 -
Vimu9g01712 753 Coils Coil 157 184 - -
Vimu9g01712 753 ProSiteProfiles PAS repeat profile. 551 596 IPR000014 -
Vimu9g01712 753 PANTHER RING FINGER PROTEIN 25 5 165 IPR039133 GO:0061630
Vimu9g01712 753 MobiDBLite consensus disorder prediction 181 229 - -
Vimu9g01712 753 Gene3D PAS domain 566 676 - -
Vimu9g01712 753 SMART pas_2 550 620 IPR000014 -
Vimu9g01712 753 Gene3D - 499 565 IPR043150 -
Vimu9g01712 753 MobiDBLite consensus disorder prediction 181 240 - -
Vimu9g01712 753 SUPERFAMILY GAF domain-like 481 551 - -
Vimu9g01712 753 SUPERFAMILY PYP-like sensor domain (PAS domain) 565 667 IPR035965 -
Vimu9g01712 753 Pfam PAS fold 551 671 IPR013767 GO:0006355
Vimu9g01712 753 Pfam Phytochrome region 501 553 IPR013515 GO:0006355|GO:0009584
Vimu9g01712 753 SMART ring_2 20 97 IPR001841 -
Vimu9g01712 753 SUPERFAMILY RING/U-box 13 104 - -
Vimu9g01712 753 ProSiteProfiles Zinc finger RING-type profile. 20 98 IPR001841 -
Vimu9g01712 753 FunFam Phytochrome 564 672 - -
Vimu9g01712 753 CDD PAS 562 672 IPR000014 -
Vimu9g01712 753 FunFam RWD domain-containing protein 16 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01712 Vimu-Chr9 26227450 26234743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01712 543 737 Histidine Kinase Gene Family AT4G16250 51.282 8.16e-55 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01712 K12123 - gmx:100808192 271.552