Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01701 ATGAACCCTCGTGCTTCAAACACTCACTTCAATGCTCCTGATCTCTCTGACCTCCATGCAACGACGCCGTTTCAGGATGCGTCGCCATCGTTATGGCCGACGGCGCTGTCCAGCCGCAGCTCCAGCTTCCGGAGCATTTTCTCCGCGGAGAACAGGGCGGAGCTGCCGCTGAAGGAGGACGACGCTGACGACATGGTTATCTACAGCGCTCTGCTTGAGGCCGCCACCACCACCGGATGGTTCCCGGAAAATGGAAATGGGGTGAGCAAAGTAGCAGTTAAAAAGGAAAATGGGGGTGAAAGCAGTGGCACCAAAGGCGAGAGTGGGATTCACGCGCCTCCGGTGAAGGGGTTGAGCTACCGAGGCGTGCGGAGGAGGCCGTGGGGGAAGTTTGCGGCGGAGATAAGAGATGCTAAGAGGAATGGTGTGAGAGTGTGGCTTGGAACGTATGAAACTGCTGAG 462 0.5736 MNPRASNTHFNAPDLSDLHATTPFQDASPSLWPTALSSRSSSFRSIFSAENRAELPLKEDDADDMVIYSALLEAATTTGWFPENGNGVSKVAVKKENGGESSGTKGESGIHAPPVKGLSYRGVRRRPWGKFAAEIRDAKRNGVRVWLGTYETAE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01701 154 Gene3D AP2/ERF domain 119 154 IPR036955 GO:0003700|GO:0006355
Vimu9g01701 154 MobiDBLite consensus disorder prediction 1 15 - -
Vimu9g01701 154 SMART rav1_2 119 154 IPR001471 GO:0003700|GO:0006355
Vimu9g01701 154 Pfam AP2 domain 120 154 IPR001471 GO:0003700|GO:0006355
Vimu9g01701 154 MobiDBLite consensus disorder prediction 95 115 - -
Vimu9g01701 154 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vimu9g01701 154 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Vimu9g01701 154 SUPERFAMILY DNA-binding domain 120 154 IPR016177 GO:0003677
Vimu9g01701 154 MobiDBLite consensus disorder prediction 1 29 - -
Vimu9g01701 154 PANTHER DNA-BINDING DOMAIN 80 154 IPR044808 GO:0003700|GO:0009873
Vimu9g01701 154 CDD AP2 120 154 IPR001471 GO:0003700|GO:0006355
Vimu9g01701 154 ProSiteProfiles AP2/ERF domain profile. 119 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01701 Vimu-Chr9 26144209 26144695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01701 39 154 AP2-EREBP Transcription Factor Family AT2G44840 52.586 3.24e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu9g01701 AP2 7.6e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01701 K09286 - gmx:100804762 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01701 9 26144209 26144695 Vimu9g01701 9 26144209 26144695 ECH