Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01700 TCTAAACGAAAACTACAAAACCATAAAAAACCAGAATGCTATAAATACAAACATTGTTCTTCCCAAAACTGCAAAAGCAGATTCGGCAAAACAAGAAAAAAAAACCCCGAAAAGGGAAAGAAAAAAGCAAACAGTTTCATTAGCATTATCTTCAAAAACATGGCCAATGATTTGTCTTCAGGTGTTCAATCATTCGAGCTTGAACACGACCCCCACATTCTTGTAAATGTTTCCGACCAAGAAACCTTTTACTCTTCCTCGTACGAGAATCCTGTAGCGAACCCTTGCCATGTCAATGACGCGACTCAATTATTTGCATGCAAAATGGAAGCACCAGTGGCACCGCGTGAGGAGCACGCGCCGCCGAAGTGGAAGCACTTCCGAGGAGTAAGGAGGCGGCCATGGGGGAAGTTCGCGGCAGAGATATGGGATCCGAAGAGAAAACATGGAAGGGTTTGGCTGGGAACGTATGAGACTGAAGAGGAAGCAGGTTTGGCTTATGATAGGGCTGCTTTCAAGATGAGAGGTAGCAAGGCAAAGTTGAATTTTCCACACCTGATTGGATCCCACGCGCTGCCGCAGAGAGTGGGAGTGGCGGGTGTTGCTCGGAAGCCGAACCTGCTG 624 0.4679 SKRKLQNHKKPECYKYKHCSSQNCKSRFGKTRKKNPEKGKKKANSFISIIFKNMANDLSSGVQSFELEHDPHILVNVSDQETFYSSSYENPVANPCHVNDATQLFACKMEAPVAPREEHAPPKWKHFRGVRRRPWGKFAAEIWDPKRKHGRVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHALPQRVGVAGVARKPNLL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01700 208 PRINTS Ethylene responsive element binding protein signature 166 186 IPR001471 GO:0003700|GO:0006355
Vimu9g01700 208 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Vimu9g01700 208 FunFam Ethylene-responsive transcription factor 2 125 185 - -
Vimu9g01700 208 CDD AP2 125 186 IPR001471 GO:0003700|GO:0006355
Vimu9g01700 208 SMART rav1_2 126 190 IPR001471 GO:0003700|GO:0006355
Vimu9g01700 208 SUPERFAMILY DNA-binding domain 126 185 IPR016177 GO:0003677
Vimu9g01700 208 PANTHER DNA-BINDING DOMAIN 86 185 IPR044808 GO:0003700|GO:0009873
Vimu9g01700 208 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Vimu9g01700 208 ProSiteProfiles AP2/ERF domain profile. 126 184 IPR001471 GO:0003700|GO:0006355
Vimu9g01700 208 Pfam AP2 domain 126 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01700 Vimu-Chr9 26137308 26137933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01700 45 189 AP2-EREBP Transcription Factor Family AT2G44840 48.276 3.04e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu9g01700 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01700 K09286 - gmx:100792115 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01700 9 26137308 26137933 Vimu9g01700 9 26137308 26137933 ECH
Vimu9g01700 9 26137308 26137933 Vimu6g00777 6 8831369 8831968 PCT