Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01699 ATGGCCACCACAACAACAACATCATCGTCATCATGTGATTTCTCATCCTTGGAATCTATTCAACACTATCTTCTTGAGCTCGAACCAGATTGTTCCAACACTCTCACGAGCGTTTACAGTCACCAAGTTTTGCATTCTCCAATGTACAAACCACTCTCGGAGGGTGGTCATGATGCAGATAATAACAACTTGTTGATAAAGGCGCGTGAGTGTCACGCGCCGCCGGTGTGGAAGCGTTTCCGAGGTGTGAGGCGACGGCCGTGGGGGAAGTTTGCTGCAGAGATAAGGGATCCGAAGAGGAATGGTGCGAGAATTTGGCTTGGAACTTATGAAAGTGAAGAAGAAGCTGGTTTGGCTTATGATAAAGCTGCATTTAAGATGCGTGGTAGCAAAGCTAAGTTAAATTTTCCTCATCTTATTGATTCTGATGTGTCTCTAAAACCTGTTAGAATGATGAAAGGTTTGAAGAAAAATGGTTTTGAATCTTATTCATCATTTTCAGCACCTTCAGAAACAGTAAAAGAATCGAAAAAGAGGAAAAACTTAGCTGAGTTGTTGAATAGGTTGGCCAAGAACAGAAGACAATTGCAGGCAGCGCGTGAAGTTCACGCGCCTCCCCAATGGAAGCGGTATAGGGGTGTGAGACGGCGGCCAAATCCAAAGAAAAATGAAGCTAAGGTTTGGCTTGGGACTTATGTAACTGAAGAAGAAGCAGGTTTAGCTTATGATAGAGCTGCTTTCAAAATACATGGAAGTAAAGCTAAGTTAAATTTTCCTAATTCTTTTGGTTGTGATGTATTATCTTCATCAGAGCCATTGAAAAAAATAGCTACAAGCAAGAAAAAGAAAACCTTAGTTGATTTGTTGAATAAGTTGGCGAAGAACAAAAAAATGACTGGGTTTAAATGA 909 0.4114 MATTTTTSSSSCDFSSLESIQHYLLELEPDCSNTLTSVYSHQVLHSPMYKPLSEGGHDADNNNLLIKARECHAPPVWKRFRGVRRRPWGKFAAEIRDPKRNGARIWLGTYESEEEAGLAYDKAAFKMRGSKAKLNFPHLIDSDVSLKPVRMMKGLKKNGFESYSSFSAPSETVKESKKRKNLAELLNRLAKNRRQLQAAREVHAPPQWKRYRGVRRRPNPKKNEAKVWLGTYVTEEEAGLAYDRAAFKIHGSKAKLNFPNSFGCDVLSSSEPLKKIATSKKKKTLVDLLNKLAKNKKMTGFK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01699 302 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
Vimu9g01699 302 Gene3D AP2/ERF domain 209 260 IPR036955 GO:0003700|GO:0006355
Vimu9g01699 302 CDD AP2 209 261 IPR001471 GO:0003700|GO:0006355
Vimu9g01699 302 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700|GO:0006355
Vimu9g01699 302 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Vimu9g01699 302 Coils Coil 179 202 - -
Vimu9g01699 302 ProSiteProfiles AP2/ERF domain profile. 210 259 IPR001471 GO:0003700|GO:0006355
Vimu9g01699 302 SUPERFAMILY DNA-binding domain 79 138 IPR016177 GO:0003677
Vimu9g01699 302 PANTHER DNA-BINDING DOMAIN 181 271 IPR044808 GO:0003700|GO:0009873
Vimu9g01699 302 Pfam AP2 domain 210 251 IPR001471 GO:0003700|GO:0006355
Vimu9g01699 302 Pfam AP2 domain 79 129 IPR001471 GO:0003700|GO:0006355
Vimu9g01699 302 SUPERFAMILY DNA-binding domain 210 261 IPR016177 GO:0003677
Vimu9g01699 302 CDD AP2 78 139 IPR001471 GO:0003700|GO:0006355
Vimu9g01699 302 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Vimu9g01699 302 SMART rav1_2 210 265 IPR001471 GO:0003700|GO:0006355
Vimu9g01699 302 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Vimu9g01699 302 FunFam Ethylene-responsive transcription factor 2 78 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01699 Vimu-Chr9 26129168 26133530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01699 203 263 AP2-EREBP Transcription Factor Family AT2G44840 60.563 2.99e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vimu9g01699 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01699 K09286 - gmx:100527194 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01699 9 26129168 26133530 Vimu9g01699 9 26129168 26133530 ECH
Vimu9g01699 9 26129168 26133530 Vimu6g00780 6 8848938 8849591 PCT