Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01698 ATGAATTTCAACACCACTCTCGAAAATCATGATTATGCTCTTCTTCAATCCATTCAACGGTTCCTCCTCGACGATACCCAAGACTTAAATGCACTCACGGCGGTTTTGGCCGCACCCAACGCCGTTTCACCTCGGGGGAGCGGCGGCGGATCCACCTCCACCCTTTTCACCACTGCCATCAACATGGAAGAGCAACCAACTACTTCCACGGCGGCGTGTGAGGTGCCTGCGGCGGCGCGTGGAGAATACACGGAAGCGCGCAGTGAACACGCGTCTTACCAGAAGTTCAAGGGAGTGAGAAGAAGACCGTGGGGAAAGTTTGCGGCTGAGATAAGAGATCCAAAGAAGAACGGGGCGAGAGTTTGGCTTGGGACTTACGACTCGGCTGAGAGTGCGGCTTTGGCTTATGATCGAGCCGCTTTTGAAATGCGTGGCTCCAAAGCTAAGCTTAATTTTCCTCATTTGATTGGATGCCATGAGCCGAGCCAGAAAGAGAATGGCTAA 504 0.5278 MNFNTTLENHDYALLQSIQRFLLDDTQDLNALTAVLAAPNAVSPRGSGGGSTSTLFTTAINMEEQPTTSTAACEVPAAARGEYTEARSEHASYQKFKGVRRRPWGKFAAEIRDPKKNGARVWLGTYDSAESAALAYDRAAFEMRGSKAKLNFPHLIGCHEPSQKENG 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01698 167 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
Vimu9g01698 167 Gene3D AP2/ERF domain 94 154 IPR036955 GO:0003700|GO:0006355
Vimu9g01698 167 PRINTS Ethylene responsive element binding protein signature 135 155 IPR001471 GO:0003700|GO:0006355
Vimu9g01698 167 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Vimu9g01698 167 FunFam Ethylene-responsive transcription factor 2 94 154 - -
Vimu9g01698 167 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
Vimu9g01698 167 CDD AP2 94 155 IPR001471 GO:0003700|GO:0006355
Vimu9g01698 167 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Vimu9g01698 167 PANTHER DNA-BINDING DOMAIN 70 159 IPR044808 GO:0003700|GO:0009873
Vimu9g01698 167 SUPERFAMILY DNA-binding domain 95 154 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01698 Vimu-Chr9 26123192 26123695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01698 66 161 AP2-EREBP Transcription Factor Family AT2G44840 66.337 5.79e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu9g01698 AP2 5.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01698 K09286 - gmx:100806359 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01698 9 26123192 26123695 Vimu9g01698 9 26123192 26123695 ECH