Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01680 ATGTCTCTCCACCGCCATGTTTGCAGAACCTCAAAGCTATCAAAGATCCCTAGGAAGTACAAGCAGTTCGCCATAGCACAGGGGCAGAAGTCTGTTACCGATTATCTCCACGCCACGCGCTGCATTCCTTACGCCTTCGCTGATCAAATCTCCAAGAACTCCAACAATGCCCTCATGAATCTCATCACCAAGCTCAGTGCTTTCTCCCCTCCCCACTATCCCCACAACCTCAACAAGTTCCTCAGGTACAACCCCATCAACGAATTCGAGTTCTTCTTTGAGAGCATTGGCATACACCCTTCAAAGTTCCCCTCTTTGTTTCCCCAGAACAAGCTCTTCTTTTCAGAAGACGAGACCCTTTTGGATGCTGCTTGTGTTCTCAGCGAATTTGGATTTCCCTGGGACAAGCTTGGGGTGCTGTATGAGGAGAGTGGGTGGGTGTTCAAGTGGGGTGCTTCTGAATTGAAGGATAGGCTTTGTGGGTTCAAAGGGTATGGTTTTTGCAACGTGCAGGTTGTGGGGATATGCTTGGCTTTCCCATCTGTGTTTGATGGCCAGAAGGGTGCTGAGGTTGAGGCTTTGTTTTGTGATCTGAGGTTGCTGTTTGGGAAGTTTGGTTTGGCTAAGTGTGTTGAAGAGAAGGGGAATAACGGTGTGGATGATTGGGTTGGGTTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGAGGAAAGAACATAGGGGAGTTAATTGGAGGGAGCAATGGCGTTGGTGTAGGTGTTGTTGTCGAGCATGGGGAGGAGGAGTTGGTTCAAACAATTGAATATTTTTGTAGGTTTGGTGCGAAGAAAGAGGAGGTGGCACGATTGATTGTGAATGGACCGGAATTGTGGGAGCTTGTTTTGAAGATGGGGAAGGTCAATGTGTTGAAGCTGTTGAAACACTTTGGAATGAGTTCCAATGATGTTGATATTGTTAAGAGGGACTATGGTCATGTGTTGGGGACAGTCAAGCTGTGTAACCTGCCAAATGTGATGAGAGCTTTGGGTTTACATGAGTGGTTCTTTGAGAAGATTAAGGGTGGGAATCATAGTTTGTTGGTTAGTTTTGTCGCGAACAATCGCGAAGTGGTCGGAGATAAAGGTTATACAAGTTTTTTGAAGGATATTGAGGTGTCTAGAACTCCAACTCACAATATGAGTAAGTTGAACTTCTTGCATGGCATTGGCTTTGGAGAAAATGCTTTGACCATGTATATTTTCTCTTATATACACGGAACAAGTGATGAGTTACAAGAGAGATTTGATTGCCTTCTTCATCGTGGGATTGAGTTTTCAAAGGTCTGTAAAATGATCACGCTTGATCCCAAGATTCTTAGGCAAAACCCTGAACTTTTGGAGCAAAAGATTAATTTCTTGTGTCAGGAAATGGGACAGTCACTTGAGATTTTGGTGACTTTTCCATCATTCTTGTGCTTTGACTTAGAGAATCGCATTAAGCCCAGGTATAGGTTCCATTTGTGGATTATGGAAAAGGGTCTGTCTTCCAAAAGATATTCTATTGCAAGCATAGTTGCAACAAGCAACAGGAATTTAGTTTCCCGTGCTTTTAAAATCCACCCTGCTGCTCCGAAACATTGGTTTGAGCAATTTATTCCCTGA 1644 0.4392 MSLHRHVCRTSKLSKIPRKYKQFAIAQGQKSVTDYLHATRCIPYAFADQISKNSNNALMNLITKLSAFSPPHYPHNLNKFLRYNPINEFEFFFESIGIHPSKFPSLFPQNKLFFSEDETLLDAACVLSEFGFPWDKLGVLYEESGWVFKWGASELKDRLCGFKGYGFCNVQVVGICLAFPSVFDGQKGAEVEALFCDLRLLFGKFGLAKCVEEKGNNGVDDWVGLCRKIRLFYDLNGGKNIGELIGGSNGVGVGVVVEHGEEELVQTIEYFCRFGAKKEEVARLIVNGPELWELVLKMGKVNVLKLLKHFGMSSNDVDIVKRDYGHVLGTVKLCNLPNVMRALGLHEWFFEKIKGGNHSLLVSFVANNREVVGDKGYTSFLKDIEVSRTPTHNMSKLNFLHGIGFGENALTMYIFSYIHGTSDELQERFDCLLHRGIEFSKVCKMITLDPKILRQNPELLEQKINFLCQEMGQSLEILVTFPSFLCFDLENRIKPRYRFHLWIMEKGLSSKRYSIASIVATSNRNLVSRAFKIHPAAPKHWFEQFIP 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01680 547 FunFam Transcription termination factor MTEF18, mitochondrial 381 541 - -
Vimu9g01680 547 Gene3D Transcription termination factor 3, mitochondrial 259 545 IPR038538 -
Vimu9g01680 547 SMART mt_12 443 474 IPR003690 GO:0003690|GO:0006355
Vimu9g01680 547 SMART mt_12 475 509 IPR003690 GO:0003690|GO:0006355
Vimu9g01680 547 Gene3D Transcription termination factor 3, mitochondrial 67 208 IPR038538 -
Vimu9g01680 547 Pfam mTERF 422 524 IPR003690 GO:0003690|GO:0006355
Vimu9g01680 547 PANTHER CGI-12 PROTEIN-RELATED 30 532 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01680 Vimu-Chr9 25981578 25985052 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu9g01680 mTERF 3.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01680 - - var:108346236 920.998