Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01676 ATGGGTGAAAAAGATGATGGGTTGGGGTTGAGGTTGAGTTTGAGATGGGGAGAAAATGATGACAATAACATGAATGAACAACACCCTTTCAAAATGCACAAACCTCCTCAACCTGTTCCAAACCAAAGGGCTTCTTCTTTCAATAGATTGTTCCATTTCCATGGTGCGTCTCATGTGACCAATCGAAGCTCTGAGCCACCACCTTTCTTCTTTGGAATAGACATGAATTTGCCGCCACCACCACCACCATCGGTGGCACCATTCTACGAGGAGAATGGTGTGTCTTCGCCGAACAGTGCAGTTTCGAGCATGAGTGGGAAAAGGAGCGAAAGAGAGGAGAATGAGAGAGGGTCATGTTCTCGAGGTGGAAGTGAAGATGATGATGGTGGAGGGTGCGGTGGTGATGTCGATGGTGACACATCGAGGAAGAAGCTGAGGTTGTTGAAAGAACAGGCCTTGGTGCTTGAAGAAACATTCAAGGAACACAACACTCTGAATCCTAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAGTCCTAGACAGGTTGAAGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAAGTGCTATGAGAATCTAACGGAGGACAATAGGAGACTACAGAAGGAAGTACAAGAGCTAAGAGCATTGAAGTTTTCCCCACAGCTCTACATGCACATGAACCCTCCAACCACTCTTACAATGTGTCCTTCCTGTGAGCGTGTTGCTGTCTCGTCTGCATCTTCCTCATCGGCTGCCATGCCTTCTGTGCCGCCTCCAGCCAATCACAACCCATTAGGCCCTACCATCCGGCGGCCAGTGCCCGTCAACCCTTGGGCGGCGATGTCAATTCAGCACCATCCCCCAGCATAA 915 0.482 MGEKDDGLGLRLSLRWGENDDNNMNEQHPFKMHKPPQPVPNQRASSFNRLFHFHGASHVTNRSSEPPPFFFGIDMNLPPPPPPSVAPFYEENGVSSPNSAVSSMSGKRSEREENERGSCSRGGSEDDDGGGCGGDVDGDTSRKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKKCYENLTEDNRRLQKEVQELRALKFSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSAAMPSVPPPANHNPLGPTIRRPVPVNPWAAMSIQHHPPA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01676 304 MobiDBLite consensus disorder prediction 106 123 - -
Vimu9g01676 304 CDD homeodomain 142 199 IPR001356 GO:0003677
Vimu9g01676 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 269 - -
Vimu9g01676 304 Pfam HD-ZIP protein N terminus 1 112 IPR006712 GO:0005634
Vimu9g01676 304 Gene3D - 147 196 - -
Vimu9g01676 304 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677
Vimu9g01676 304 MobiDBLite consensus disorder prediction 82 140 - -
Vimu9g01676 304 Pfam Homeodomain 142 196 IPR001356 GO:0003677
Vimu9g01676 304 FunFam Homeobox-leucine zipper protein 18 130 203 - -
Vimu9g01676 304 SMART halz 198 241 IPR003106 GO:0006355|GO:0043565
Vimu9g01676 304 MobiDBLite consensus disorder prediction 91 105 - -
Vimu9g01676 304 MobiDBLite consensus disorder prediction 1 43 - -
Vimu9g01676 304 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981|GO:0006355
Vimu9g01676 304 Coils Coil 204 231 - -
Vimu9g01676 304 SMART HOX_1 140 202 IPR001356 GO:0003677
Vimu9g01676 304 SUPERFAMILY Homeodomain-like 128 199 IPR009057 -
Vimu9g01676 304 MobiDBLite consensus disorder prediction 264 286 - -
Vimu9g01676 304 Pfam Homeobox associated leucine zipper 198 231 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01676 Vimu-Chr9 25953464 25956069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01676 60 304 Homeobox Transcription Factor Family AT3G60390 61.977 2.33e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu9g01676 HD-ZIP_N 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01676 K09338 - gmx:100810641 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01676 9 25953464 25956069 Vimu9g01676 9 25953464 25956069 ECH
Vimu9g01676 9 25953464 25956069 Vimu6g00793 6 8938467 8941183 PCT