Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01675 ATGGTTGGGTTTGGAACAGACATGTCTCTCCACCGCCATGTTTGCAGAACCTCAAAGCCATCAAAGATCCCTTGGAAGTACAAGCAGTTCGCCATAGCACAGGGGCAGAAGTCTGTTACTGATTATCTCCACGCCACGCGCTGCATTCCTTACGCCTACGCTGATCAAATCTCCAAGAACTCCAACAATGCCCTCATGAATCTCATCACCAAGCTCAGTGCTTTCTCCCCTCTCCACTATCCCCACAACCTCAATAAGTTCCTCAGGTACAATCCCATCAACGAATTCGAGTTCTTCTTTGAGAGCATTGGCATACACCCTTCAAAGTTCCCCTCTTTGTTTCCCCAGAACAAGTTCTTCTTTTCAGATGATGAGACCCTTTTGGATACTGCTTGTGTTCTCAGCGAATTTGGGTTTCCCTGGGACAAGCTTGGGGTGCTGTATGAGGAGAGTGGGTGGGTGTTCAAGTGGGGTGCTTCTGAATTGAAGGATAGGCTTTGTGGGTTCAAAGGGTATGGTTTTTGCAATGTGCAGGTTGTGGGGATATGCTTGGCTTTCCCATTTGTGTTTGATGGCCAGAAGGGTGCTGAGGTTGAGGCTTTGTTTTGTGATCTGAGGTTGCTGTTTGGGAAGTTTGGTTTGGCTGAGTGTGTTGAAGAGAAGGGGAATAATGGTGTGGATGATTGGGTTGGGTTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGAGGGAAGAACATAGGGGAGTTAATTGGAGGGAACAATGGCGTTGGTGTAGGTGTTGTTGTTGAGCATGGGGAAGAGGAGTTGGTTCAAGCAATTGAGTATTTTTGTAGGTTTGGTGCGAAGAAAGAGGAAGTGGCACGATTGATTTTGAATGGACCGGAATTGTTAGAGCTTGTTTTGAAGATGGGAAATTTCAATGTGTTGAAGCTATTGAAACACTTTGGAATGAATTCCAATGATCTTGATATTGTTAAGAGGGACTATGCTCATGTGTTGGGGACAGTCAAGCCGTGTAACCTGCCAAATGTGATGAGAGCTTTGGGTTTACGTGAGTGGTTCTTTGAGAAGATTAAGGATGGGAATCATAGTTTGTTGGTTAGTTTTGTCGCGAACAATCGCGAAGTGGTCGGAGATAAAGGTTATACAAGTTTTTTAAAGGCTATTGAGGTGTCTAGAACTCCAATTCACAAAATGAGTAAGTTGAACTTCTTGCATGGCATTGGTTTTGGAGAAAATGCTTTGACCATGTATATTTTCTCTTACATGCACGGAACAAGTGATGAGTTACAAAAGAGATTTGATCGCCTTCTACATCTTGGGATTGAGTTTTCAAAGCTCTGTAAAATGATCACGGTTCATCCCAAGATTCTTAGCCAAAACCCTGAAAGTTTGGAGCAAAAGATTAATTTCTTGTGTCAGGAAATGGGACAGTCACTTGAGATTTTGGTGACTTTTCCATCATTCTTGTGCTTTGACTTAGAGAATCGCATTAAGCCCAGGTATAGGTTCCATATGTGGTTTATGGAAAAGGGTCTGTCTTCCAAAAGATATTCTATTGCAAGCATGGTTGCAACAAGCAACAGGACTTTCGTTTCCCGTGCTTTTAAAATCCACCCTGCTGCTCCGAAACATTGGTTTGAGCAATTTTATCCCTGA 1665 0.4318 MVGFGTDMSLHRHVCRTSKPSKIPWKYKQFAIAQGQKSVTDYLHATRCIPYAYADQISKNSNNALMNLITKLSAFSPLHYPHNLNKFLRYNPINEFEFFFESIGIHPSKFPSLFPQNKFFFSDDETLLDTACVLSEFGFPWDKLGVLYEESGWVFKWGASELKDRLCGFKGYGFCNVQVVGICLAFPFVFDGQKGAEVEALFCDLRLLFGKFGLAECVEEKGNNGVDDWVGLCRKIRLFYDLNGGKNIGELIGGNNGVGVGVVVEHGEEELVQAIEYFCRFGAKKEEVARLILNGPELLELVLKMGNFNVLKLLKHFGMNSNDLDIVKRDYAHVLGTVKPCNLPNVMRALGLREWFFEKIKDGNHSLLVSFVANNREVVGDKGYTSFLKAIEVSRTPIHKMSKLNFLHGIGFGENALTMYIFSYMHGTSDELQKRFDRLLHLGIEFSKLCKMITVHPKILSQNPESLEQKINFLCQEMGQSLEILVTFPSFLCFDLENRIKPRYRFHMWFMEKGLSSKRYSIASMVATSNRTFVSRAFKIHPAAPKHWFEQFYP 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01675 554 FunFam Transcription termination factor MTEF18, mitochondrial 388 548 - -
Vimu9g01675 554 Pfam mTERF 429 533 IPR003690 GO:0003690|GO:0006355
Vimu9g01675 554 PANTHER CGI-12 PROTEIN-RELATED 38 540 IPR003690 GO:0003690|GO:0006355
Vimu9g01675 554 Gene3D Transcription termination factor 3, mitochondrial 265 552 IPR038538 -
Vimu9g01675 554 Gene3D Transcription termination factor 3, mitochondrial 71 215 IPR038538 -
Vimu9g01675 554 SMART mt_12 450 481 IPR003690 GO:0003690|GO:0006355
Vimu9g01675 554 SMART mt_12 482 516 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01675 Vimu-Chr9 25943375 25946913 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu9g01675 mTERF 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01675 - - var:108346236 909.827