Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01666 ATGCACGGGAAAAAGGAGCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAGGTGTTACTGAACCATGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGAACTGGCAAGTCCTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTTTCACTCGAGGAAGAGAGGATTGTGATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCTAAGATTGCATCCTTTTTGTCAGGGAGAACAGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCCAGGATTCTACAGACATCGGGAACAACTTCCAAATCACAGAAAAATAAAACAAAAGTTCCTACCCTTCTTGATGTTCCAACTTTGGAGATTTCCACAAAGACAACTGAAATTGTGACTGACCAAATCAAATTTCAAGAACTGGTTTGTCCTGTTGATGATGTCCCCAAATTCTTAGAACTTCCTTGCCCAGATAATGCAGCTCCAAAATTCAGTTCTTCATCAGAGGGAGAATCATCATCAAAGCCTCAGTCATACTCACTGCCTTTGATTGAGAATTCTGAGGTTATGAAAATGGTATCTTTGCCAGATCTCATAAAGTCTGAGTTACCTAGTTCTGACCCAATCCATGTTGAACAAGGTTTTACCCCTTTTGAGAGCTATAACAGTAGTGAGCAGATTCAACAGATTTCCTTTCCTCAGATTCCAGAACTCCAAAATGATCTCACATTCCCAATGGGAAGCCAAGATGTCTTAGCCAGAATGGATGAGCCATATTTCGTTGAAGACTATTGTGCTCTTGATGATGCATCTGAGTTTGGAATAGGTCTGCAGCACCCCATTGGATTCCCTTTCTTCGAGCCACCAGGAAGTTGCAGAATTGAGACAAGGGATACCATTGATAAGTTCAAAAGCAGTGACAGCTTCTTCGATGACTTCCCTATAGACATGTTTGATCACATGGACCCACCTGCAAGCCCTTCTTACTTATGA 1059 0.4249 MHGKKEQEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNRWAKIASFLSGRTDNDVKNFWSSRQKRLARILQTSGTTSKSQKNKTKVPTLLDVPTLEISTKTTEIVTDQIKFQELVCPVDDVPKFLELPCPDNAAPKFSSSSEGESSSKPQSYSLPLIENSEVMKMVSLPDLIKSELPSSDPIHVEQGFTPFESYNSSEQIQQISFPQIPELQNDLTFPMGSQDVLARMDEPYFVEDYCALDDASEFGIGLQHPIGFPFFEPPGSCRIETRDTIDKFKSSDSFFDDFPIDMFDHMDPPASPSYL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01666 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Vimu9g01666 352 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu9g01666 352 Gene3D - 68 137 - -
Vimu9g01666 352 FunFam Transcription factor GAMYB 68 137 - -
Vimu9g01666 352 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Vimu9g01666 352 CDD SANT 69 108 IPR001005 -
Vimu9g01666 352 CDD SANT 15 60 IPR001005 -
Vimu9g01666 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Vimu9g01666 352 FunFam MYB transcription factor 13 65 - -
Vimu9g01666 352 Pfam Myb-like DNA-binding domain 16 66 - -
Vimu9g01666 352 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vimu9g01666 352 Pfam Myb-like DNA-binding domain 69 108 IPR001005 -
Vimu9g01666 352 Gene3D - 13 65 - -
Vimu9g01666 352 PANTHER TRANSCRIPTION FACTOR DUO1 3 350 - -
Vimu9g01666 352 SMART sant 66 114 IPR001005 -
Vimu9g01666 352 SMART sant 12 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01666 Vimu-Chr9 25892955 25895063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01666 1 349 MYB Transcription Factor Family AT3G60460 42.416 1.80e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu9g01666 Myb_DNA-bind_6 6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01666 K09422 - gmx:100805384 478.789