Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01659 ATGTTTGGACGAGGTGGGCCTAGGAGGAGTGATAACTCCAAATATTATGATATTCTTGGAGTTTCAAAGAATGCCACTGAAGATGAAATCAAGAAAGCATACAGAAAGGCAGCTATGAAGAATCATCCAGATAAAGGTGGAGATCCTGAAAAGTTTAAGGAGTTAGGTCAAGCGTATGAAGTCTTAAGTGATCCTGAGAAGAAAGAATTGTATGATCAGTACGGTGAAGATGCCCTTAAAGAAGGGATGGGAGGAGGAGGAGGAGGCTCATTTCATAATCCATTTGATATATTTGAGTCATTTTTTGGAGGATCAAGCTTTGGTGGTGGTGGTAGTTCTCGAGGCAGAAGACAAAAACATGGTGAAGATGTGGTGCACTCTTTAAAGGTGTCCTTGGAGGATGTCTATAACGGTGCAACTAAGAAACTATCTCTTTCTAGAAATGTATTATGCCCAAAGTGTAAAGGGAAAGGATCAAAAAGTGGAGCAACTAGTAGGTGTTTTGGTTGCCAAGGCACTGGTATGAAGGTCACAAGAAGGCAGATAGGACTAGGCATGATGCAACAAATGCAACATGTCTGCCCAGACTGCAGAGGATCTGGTGAGGTTATTAGCGAGAGAGATAAATGTTCTCAATGCAAAGGAAACAAGGTTACTCATGAAAAGAAGGTACTGGAGGTGCATGTTGAAGAGGGAATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTCCTGACGCATTGACAGGGGACATTGTTTTAGTATTGGCAGTGAAGGAGCACCCAAAGTTCAGAAGGGAGCGAGATGATCTCTTCATTGATCACACTCTCAGCTTAAGTGAGGCACTCTGTGGCTTCCAGTTTACTATCACACATCTTGATGGCAGACAATTACTGATCAAGTCAAACCCTGGAGAAGTCATTAAGCCAGGTCAATCTAAAGCAATAAATGATGAGGGAATGCCACTACACAACAAGACATTCATGAGGGGTCGACTTTACATCCAGTTCAATGTTGAATTCCCAGACTCGGGGTTTATTTCTCCTGATCAATGCCAGTTATTGGAAAAAGTATTACCCCAGAAGGGCAGCAAGCGCATTTCAGATGCAGAGCTTGATGACTGTGAAGAGACCACTTTGCATGATGTCAACTTGAAGGAGGAGATGAAAAGAAAGCATCAACACCATTACCGCGAGGCATATGATGAAGACGAAGATGAAGGTCCCTCTGGTCACAGGGTGCAATGTGCTCAACAGTAG 1272 0.4316 MFGRGGPRRSDNSKYYDILGVSKNATEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGGGGSFHNPFDIFESFFGGSSFGGGGSSRGRRQKHGEDVVHSLKVSLEDVYNGATKKLSLSRNVLCPKCKGKGSKSGATSRCFGCQGTGMKVTRRQIGLGMMQQMQHVCPDCRGSGEVISERDKCSQCKGNKVTHEKKVLEVHVEEGMQQGQKIVFEGQADEAPDALTGDIVLVLAVKEHPKFRRERDDLFIDHTLSLSEALCGFQFTITHLDGRQLLIKSNPGEVIKPGQSKAINDEGMPLHNKTFMRGRLYIQFNVEFPDSGFISPDQCQLLEKVLPQKGSKRISDAELDDCEETTLHDVNLKEEMKRKHQHHYREAYDEDEDEGPSGHRVQCAQQ 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01659 423 MobiDBLite consensus disorder prediction 390 423 - -
Vimu9g01659 423 Gene3D - 121 258 - -
Vimu9g01659 423 Gene3D DnaJ domain 11 114 IPR036869 -
Vimu9g01659 423 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Vimu9g01659 423 SUPERFAMILY HSP40/DnaJ peptide-binding domain 268 348 IPR008971 GO:0006457|GO:0051082
Vimu9g01659 423 ProSiteProfiles Zinc finger CR-type profile. 138 222 IPR001305 GO:0031072|GO:0051082
Vimu9g01659 423 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 13 403 IPR044713 GO:0006457|GO:0030544
Vimu9g01659 423 FunFam DnaJ subfamily A member 2 151 217 - -
Vimu9g01659 423 FunFam dnaJ protein homolog 11 112 - -
Vimu9g01659 423 Pfam DnaJ C terminal domain 125 346 IPR002939 -
Vimu9g01659 423 SMART dnaj_3 13 67 IPR001623 -
Vimu9g01659 423 Pfam DnaJ central domain 151 217 IPR001305 GO:0031072|GO:0051082
Vimu9g01659 423 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 148 219 IPR036410 -
Vimu9g01659 423 Gene3D - 265 347 - -
Vimu9g01659 423 PRINTS DnaJ domain signature 67 86 IPR001623 -
Vimu9g01659 423 PRINTS DnaJ domain signature 47 67 IPR001623 -
Vimu9g01659 423 PRINTS DnaJ domain signature 16 34 IPR001623 -
Vimu9g01659 423 Pfam DnaJ domain 14 72 IPR001623 -
Vimu9g01659 423 SUPERFAMILY HSP40/DnaJ peptide-binding domain 122 266 IPR008971 GO:0006457|GO:0051082
Vimu9g01659 423 Gene3D - 151 217 - -
Vimu9g01659 423 Hamap Chaperone protein DnaJ [dnaJ]. 11 374 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vimu9g01659 423 FunFam DnaJ subfamily A member 2 265 347 - -
Vimu9g01659 423 MobiDBLite consensus disorder prediction 390 415 - -
Vimu9g01659 423 CDD DnaJ_zf 151 217 IPR001305 GO:0031072|GO:0051082
Vimu9g01659 423 CDD DnaJ_C 122 348 - -
Vimu9g01659 423 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Vimu9g01659 423 CDD DnaJ 15 64 IPR001623 -
Vimu9g01659 423 SUPERFAMILY Chaperone J-domain 10 110 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01659 Vimu-Chr9 25826011 25829435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01659 9 74 C2H2 Transcription Factor Family AT1G74250 42.667 1.03e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01659 K09503 - gmx:100812236 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01659 9 25826011 25829435 Vimu9g01659 9 25826011 25829435 ECH