Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01658 ATGGAAAATGATGCTGACTTCTTCAATTCCTTTGCCTCAACTTCCACTTCTACCACCACCAACACCACCACAATAACCACAAACCCTTCAATCTTTATAGACACAACAAACACTTCTATTTCTAGCACATCATCGTCATCTTCAACCTCAAACTCCTCAAACTCAGATTCCAACACCCCTACCACTTCTCAAACCTTGTTGGAAAATGAAAAGGAATCAAAAGGGTGCTGCAAGAAGAGGAAATTGGAGAATCCTTCCTATAGGGGTGTGAGGATGAGGAACTGGGGCAAATGGGTGTCTGAAATCCGTGAGCCAAGGAAAAAATCCAGAATTTGGCTTGGAACATACCCTACTGCAGAAATGGCTGCCAGAGCACATGATGTAGCTGCCTTAGCCATCAAGGGCCATTCTGCATACCTCAATTTCCCCGAATTGGCTCAAGAACTTCCGACACCAGCTTCCACTTCACCTAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAACACACCCTTTGATGTTAATCATTGCCAAACTACTATTGAAGATGAAGAAGCACAAGAAGAAGAACCAAACCAAACACAAAATGTCTCATCTTCAAGCTCAAACTCCACCAACGATGATGACACTTTGTTTGATCTACCAGATCTTTTCCCTGATGAACTTTGCTCCTATTCTTCTTCTTGGCATTTGTGTGCAGTTGGTAGTGGATTTAGGCTTGAGGAATCAATTTTTTGGGAGAATTATTAG 750 0.4267 MENDADFFNSFASTSTSTTTNTTTITTNPSIFIDTTNTSISSTSSSSSTSNSSNSDSNTPTTSQTLLENEKESKGCCKKRKLENPSYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPTPASTSPKDIQAAAAKAANTPFDVNHCQTTIEDEEAQEEEPNQTQNVSSSSSNSTNDDDTLFDLPDLFPDELCSYSSSWHLCAVGSGFRLEESIFWENY 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01658 249 FunFam Ethylene-responsive transcription factor 2 85 144 - -
Vimu9g01658 249 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Vimu9g01658 249 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Vimu9g01658 249 CDD AP2 85 145 IPR001471 GO:0003700|GO:0006355
Vimu9g01658 249 Gene3D AP2/ERF domain 86 144 IPR036955 GO:0003700|GO:0006355
Vimu9g01658 249 MobiDBLite consensus disorder prediction 1 78 - -
Vimu9g01658 249 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Vimu9g01658 249 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Vimu9g01658 249 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 48 221 - -
Vimu9g01658 249 MobiDBLite consensus disorder prediction 1 70 - -
Vimu9g01658 249 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Vimu9g01658 249 MobiDBLite consensus disorder prediction 184 211 - -
Vimu9g01658 249 MobiDBLite consensus disorder prediction 191 210 - -
Vimu9g01658 249 Pfam AP2 domain 85 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01658 Vimu-Chr9 25799025 25799807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01658 78 245 AP2-EREBP Transcription Factor Family AT2G44940 52.913 3.70e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu9g01658 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01658 - - var:108346814 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01658 9 25799025 25799807 Vimu9g01658 9 25799025 25799807 ECH